Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1937 ATGGTTGGATTCCAGAGTAGTGAACACATGCCTGGGAGCAAGTGTAACGGTAATTCTAATAATTTTCCAGGTCGAGTTGAACGACTCGTCAGAGGAAGAGAGCTAAGAAAAAATAATATTTATAATGCTAATGGCGTTGCTGAATATTTTGAGCGTGACCTGCGCTTGGGAGAAGAAAATAATTACTGTGTTGAACGTTCCCTAGAAGGGGTAGCAGCATCAAAGTCTCTTTGTGAAAGGGATGATGGGAAACCTTTCAGGCAACGGCTTTTGGTTGTTGCCAACAGGCTGCCAGTCTCAGCTGTTAGGAGAGGTGAGGATTCATGGTCTTTGGAGATAAGTGCCGGTGGCCTTGTTAGCGCTCTCTTAGGTGTGAAGGAATTTGAGGCAAGGTGGATAGGTTGGGCTGGAGTCAACGTGCCTGATGAGATTGGACAGAAGGCACTTACTAAAGCCTTGGCTGAAAAAAGATGTATCCCAGTGTTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAATAACATCTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGTCTTGCCACCACGCGTAGTTTCCAGTCTCAGTTTACAGCATATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTTAATGAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGACTACCATCTTATGTTTCTTCCACAATGCTTAAAGAAATATAATAGCAACATGAAAGTTGGCTGGTTTCTACACACCCCGTTTCCATCTTCTGAAATTCACAGGACTCTGCCATCTCGATCGGAGCTCTTGCATGCAGTTCTTGCAGCTGACCTAGTTGGCTTTCACACCTATGATTATGCACGGCATTTCGTTAGTGCATGTACACGCATCCTTGGACTTGAGGGCACTCCTGAAGGGGTTGAGTATCAAGGGAAGCTGACTCGAGTTGCTGCATTCCCAATTGGTATAGACTCTCACCGATTTAAACGAGCACTTGAACTTCCTGAAGTCCAGAAGCACATCAAAGACTTAGAAGAAAGATTTAAACACAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTGGCATTTGAAAAATTTTTAGAAGAGAATCCTGACTGGCGTGAAAAAGTTGTTCTGCTTCAAATTGCTGTCCCAACAAGAACAGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGAAGATTCGGATCATTGACTGCTGTTCCTATACATCACCTGGATCGATCTCTTGACTTCTATGCATTATGTGCTTTGTATGCTGTTACAGATGTTGCACTTGTCACATCATTGAGGGATGGAATGAATCTTGTCAGTTATGAATTTGTCGCTTGCCAAGCTAAAAAAAAAGGAGTTCTCATTCTTAGCGAATTTGCTGGTGCTGCGCAGTCTCTTGGTGCTGGGGCAATTCTGGTCAACCCCTGGAACATCACAGAAGTTGCCGCTGCAATTGACAAGGCTTTAAATATGGAACCAGTGGAAAGACAGAACAGACACAAACATAACTTTGAGCATGTAACACAGCACACTGCTCAGGAATGGGCAGAAACTTTTGTCAGTGAATTGAATGATACTGTTGTTGAGGCACAGCTAAGGACAAAACAAGCTCCACCCCGACTCCCAACCAAGACTGCAATCGAACGTTATCTGCAGTCAAGTAACCGATTGCTCATTTTGGGGTTTAATGGAACTTTAACTGAACCTGTTGAGAAAAGAGGTGACCAGTTTAAAGAAATGGAGCTCACTGTTCATCCAGAACTGAAACAACCCTTGAAAGAACTTTGCAGTGACCCAAAGACCACAATTGTTGTGCTAAGTGGAAGTGGTCGAGCAGTTCTAGATCAAAACTTCAAAGAGTATGACATGTGGCTGGCAGCAGAGAATGGGATGTTTCTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCAGAACAGCTGAATATGGAATGGGTTGACAGTTTGAAGCATGTTTTTTTGTACTTCAGGGAGAGAACACCGCGGTCGTGTTTCGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAAACATGCAGATGTTGAGTTTGGAAGAGTTCAAGCAAGGGACATGCTGCAGCATCTTTGGACAGGCCCAATTTCTAATGCGTCAGTTGAAGTTGTTCAAGGTAGCAGATCTGTTGAGGTGCGAGCTGCTGGAGTTACAAAGGGAGCAGCTATTGACCGCATCCTGGGTGAGATAGTCCACAGCAAATCCATGACAACACCGATTGATTATGTCCTCTGTATAGGACATTTTCTTGCAAAGCAGGATGAAGACATATATGCGTTTTTTGAGCCCGAGCTTCCTTCTTCCGGTGCGGCTCATTCACGAAGCAAGGTAACAGATGGAATCAAGTTTCCAGGTGAGAAGATGACATCTTTGAAGATCCCTGCTAACAAAAATGGAACAAAGTCATCTCAAAATAAGGCACAACGGCCTGCTCCAAATTCTGAGAAGAAACCAACCAACCATGTCTGCCGTGCACCACGCCGGCCGGCTCCTGAAAAGATCTCTTGGAATGTGCTTGACCTGAAGAAGGAGAATTACTTCTCTTGCGCCGTTGGACGAACGCAAACGAATGCTCGGTATACACTTGGCTCTTCAGATGACGTTGTTGCATTTCTGAAGGAACTAGCTGGTGCTTCCTCAAACTCTCTATTTCAGAGTACCTGA 2787 0.4381 MVGFQSSEHMPGSKCNGNSNNFPGRVERLVRGRELRKNNIYNANGVAEYFERDLRLGEENNYCVERSLEGVAASKSLCERDDGKPFRQRLLVVANRLPVSAVRRGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFTAYQKANQMFADVVNEHYEEGDVVWCHDYHLMFLPQCLKKYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEYQGKLTRVAAFPIGIDSHRFKRALELPEVQKHIKDLEERFKHRKVMLGVDRLDMIKGIPQKILAFEKFLEENPDWREKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRSLDFYALCALYAVTDVALVTSLRDGMNLVSYEFVACQAKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIDKALNMEPVERQNRHKHNFEHVTQHTAQEWAETFVSELNDTVVEAQLRTKQAPPRLPTKTAIERYLQSSNRLLILGFNGTLTEPVEKRGDQFKEMELTVHPELKQPLKELCSDPKTTIVVLSGSGRAVLDQNFKEYDMWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSLKHVFLYFRERTPRSCFEEREASLVWNYKHADVEFGRVQARDMLQHLWTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLAKQDEDIYAFFEPELPSSGAAHSRSKVTDGIKFPGEKMTSLKIPANKNGTKSSQNKAQRPAPNSEKKPTNHVCRAPRRPAPEKISWNVLDLKKENYFSCAVGRTQTNARYTLGSSDDVVAFLKELAGASSNSLFQST* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1937 928 MobiDBLite consensus disorder prediction 834 856 - -
Amo18g1937 928 Gene3D Glycogen Phosphorylase B; 336 538 - -
Amo18g1937 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 25 917 - -
Amo18g1937 928 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 25 917 IPR001830 GO:0003824|GO:0005992
Amo18g1937 928 Gene3D - 589 770 IPR023214 -
Amo18g1937 928 TIGRFAM T6PP: trehalose-phosphatase 585 799 IPR003337 GO:0003824|GO:0005992
Amo18g1937 928 CDD GT20_TPS 89 554 IPR001830 GO:0003824|GO:0005992
Amo18g1937 928 Gene3D Glycogen Phosphorylase B; 81 335 - -
Amo18g1937 928 CDD HAD_TPP 587 805 - -
Amo18g1937 928 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 557 - -
Amo18g1937 928 Pfam Glycosyltransferase family 20 89 554 IPR001830 GO:0003824|GO:0005992
Amo18g1937 928 MobiDBLite consensus disorder prediction 1 21 - -
Amo18g1937 928 MobiDBLite consensus disorder prediction 829 869 - -
Amo18g1937 928 Pfam Trehalose-phosphatase 592 821 IPR003337 GO:0003824|GO:0005992
Amo18g1937 928 Gene3D - 676 756 - -
Amo18g1937 928 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 89 554 IPR012766 GO:0003825|GO:0005992
Amo18g1937 928 SUPERFAMILY HAD-like 586 917 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1937 Amo-Chr18 45304769 45318051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1937 10 922 Trehalose Biosynthesis Gene Families AT1G78580 77.176 0.0 1454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1937 K16055 - gmx:100789554 1568.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1937 18 45304769 45318051 Amo18g1937 18 45304769 45318051 ECH
Amo18g1937 18 45304769 45318051 Amo07g2234 07 67474661 67488063 hybridization