Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1876 ATGCTTAATTGCCTAACTTTTTTACTTTCATGTCCCTGCAAATTTTGCACACACTTCAAACTTCAAAGCATGAAACTCATAACTATCTTCTTTCTCTTTCTCCTCCTTGCATCACCAATAGTTTCTGGAGCCACTCTAAAACAACAGGAAGTGGAAGTTCTCAAAGAGATTGGGAACACGCTTGGGAAAAAGGATTGGGACTTCAGCGTAGATCCATGTAGCGGAGAACGGAATTGGACTTCCCCTGCTTCAAAATCTTATTCAGAACTAAATGCAGTAAATTGTGATTGTTCTTTCTCTAATCACACTCTCTGCCATGTAGTTAGCATAGTTCTGAAATCACAAAATCTTTCTGGTACTCTTCCGCCGCAGCTTGCAAGGTTGCCTTACCTACAAGAAATTGATCTCACCCTCAACTACCTTAACGGCACAATTCCAAAGCAATGGAGTTCCTTGAATCTTGTCAACATTTCTCTTTATGGAAATCGTGTAACAGGTTCAATCCCAAAGGAACTAGGAAATATAACAACTCTCAAAAGTTTGGTCCTGGAGTTCAATCAATTATCTGGAAATCTACCTACGGAGCTTGGGAGCCTTCCCCAAATTGAAACACTACTTCTTACTTCCAATAATTTCACTGGAGAGTTGCCTGCATCATTTGCTAACCTCACTACACTGAAGAACATTCGACTAGGTGACAATCAATTCTCTGGATCAATACCCAATTTTATTCAGAACTGGAGAAGTGTTGAGACAATGGTAATCCAGGGTAGTGGCTTCAGTGGGCCAATTCCTTCAGGAATTTCACTTATGAAGAACCTTAATGACTTGAGAATTAGTGACTTGAATGGATCCGATTCACCTTTTCCCCAACTTGATAGAATCACAAATTTGCAGACACTAATGTTGAGGAGTTGCAATATCATTGGAGCAATGCCTGAAAATCTTGGGAACTTGACTAATTTGAAAGTTCTAGATCTCAGCTACAACAAATTAAGTGGGCAGATTCCGAGCAGCTTTGCTGAACTACAGAAAATGGACATGCTATTTTTAACTAGGAACCTTCTAACTGGACCACTGCCCGATTGGATATCTAAACCTGATTTTGTAGATCTCTCATTTAACAACTTCAGCATAAGAAAGTCAGAGGAACCAGGTTGTCAACAGGGAAGCACGAACTTGTTTGCATCCTCCGTGAATGGCAACAGCATAGGAAATATTTCATGTCTGCAAAACACTGGCTGTACTAAAACTTGGTACTCTCTCTATATAAATTGTGGTGGAAAGCAAGTAGTTTCTAATGGAAATAAGACATATGATGATGATTCGGGTACGACTGGACCAGCAAGATTTCTCTCTGAAGGAACAAACTGGGCACTCATTACCACTGGTCACTTCTTCGACAGTGGTCGTGCAGACTACTACACATGGTCTACTACAAACAAACTTGCAATGGAAAATGATGAACTGTATAGGGATGCACGTGTTTCTCCCGTTTCTCTGACTTATTATGCATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTTCATTTTGCGGAGATAATGTTCACAGATGATAAAACATATAGCAGTCTGGGAAGGCGTGTATTTGACATCTACATTCAGAGAAAGTTAGTGTTGAAGGATTTCAATATTGCAAAGGAAGCAGGGGGTGTTGGGAAGGCAGTAATAAAAAATTTCACTGCTGTTGTGACTGCTAAAGCCTTGGAGATCCGCTTATATTGGGCTGGAAAAGGAACAACTACTATTCCATTTGGATCAGTATACGGTCCTCTTATATCAGCTATATCTGTTGATCCAGATTTTGTACCACCTCCTCCTACGGTGAATGGTGGTGGCTTGTCCGTAGGCGCTATTGTTGCCATTGTTGTTGCAGGAGCAATTATTATCATATTGATTTTTGGCATACTTTGGTGGAAGCACTGTTTTGGACAAAAAAGTTCAGTGCCTAAAGAACTCAAGGACATAAACTCACAAACTACCATATTCACATTAAGGCAAATAAGAGCAGCTACAAACAACTTTGATAGAGCCTTCAAGATTGGACAGGGAGGATTTGGTCCTGTGTACAAGGGTGTCCTATCAGATGGCACAAGAATTGCAGTTAAGCAACTTTCCGATAAATCAGTGCAAGGGAATCGTGAGTTTATAAACGAGATTGGAATGATTTCTGCCTTGCGGCACCCTTACTTGGTTAAACTCTATGGATTTTGTATGGAGGAGGATCAGTTGTTGCTTGTATATGAATACATGGAGAATAATAGCCTTGCACATGCTTTATTCGATGGAAATTATGACAGGAAAACTGAATTGAGATTAGACTGGCAAACAAGACAGAGGATTTGTGTCGGTATTGCTAAAGGTTTGGCTTACCTTCATGGAGAATCAAGATTGAAGATCGTTCATAGGGACATTAAAGCCACCAATGTGTTGCTGGATAAAGATCTCAACCCGAAGATATCAGATTTTGGTTTGGCCAAGCTTGATGAACAAAACAAAACACACATAAGCACCAGAATAGCGGGAACTTATGGGTACATCGCTCCGGAGTATGCGATGCATGGTTATTTGACGGACAAAGCTGATGTTTATAGTTTCGGAATAGTCGCTTTGGAAATAGTTAGTGGGAAGAGCAATACGCTTACCAACCCCACAGATGAATTCTTCTCTCTTCTTGATTGGGCAAATCTCTTGAAAGAAAAAGGCAATCTATTGGAACTTGTTGATGGGAGGTTGGGTGAAGACTTAAACAAAGAGGAGGCATTGGTGATGATCAAAGTGGGCTCTTCTATGTACCAATGCCTCTCCGGTGCTCCGGCCCACCATGGCTTCAGTGGTAATGATGCTTGA 2874 0.4071 MLNCLTFLLSCPCKFCTHFKLQSMKLITIFFLFLLLASPIVSGATLKQQEVEVLKEIGNTLGKKDWDFSVDPCSGERNWTSPASKSYSELNAVNCDCSFSNHTLCHVVSIVLKSQNLSGTLPPQLARLPYLQEIDLTLNYLNGTIPKQWSSLNLVNISLYGNRVTGSIPKELGNITTLKSLVLEFNQLSGNLPTELGSLPQIETLLLTSNNFTGELPASFANLTTLKNIRLGDNQFSGSIPNFIQNWRSVETMVIQGSGFSGPIPSGISLMKNLNDLRISDLNGSDSPFPQLDRITNLQTLMLRSCNIIGAMPENLGNLTNLKVLDLSYNKLSGQIPSSFAELQKMDMLFLTRNLLTGPLPDWISKPDFVDLSFNNFSIRKSEEPGCQQGSTNLFASSVNGNSIGNISCLQNTGCTKTWYSLYINCGGKQVVSNGNKTYDDDSGTTGPARFLSEGTNWALITTGHFFDSGRADYYTWSTTNKLAMENDELYRDARVSPVSLTYYAFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGKAVIKNFTAVVTAKALEIRLYWAGKGTTTIPFGSVYGPLISAISVDPDFVPPPPTVNGGGLSVGAIVAIVVAGAIIIILIFGILWWKHCFGQKSSVPKELKDINSQTTIFTLRQIRAATNNFDRAFKIGQGGFGPVYKGVLSDGTRIAVKQLSDKSVQGNREFINEIGMISALRHPYLVKLYGFCMEEDQLLLVYEYMENNSLAHALFDGNYDRKTELRLDWQTRQRICVGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEQNKTHISTRIAGTYGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTLTNPTDEFFSLLDWANLLKEKGNLLELVDGRLGEDLNKEEALVMIKVGSSMYQCLSGAPAHHGFSGNDA* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1876 957 SUPERFAMILY Protein kinase-like (PK-like) 665 922 IPR011009 -
Amo18g1876 957 Gene3D Ribonuclease Inhibitor 211 285 IPR032675 -
Amo18g1876 957 Gene3D Phosphorylase Kinase; domain 1 649 758 - -
Amo18g1876 957 Gene3D - 419 608 - -
Amo18g1876 957 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 310 366 - -
Amo18g1876 957 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 399 937 - -
Amo18g1876 957 Pfam Leucine rich repeat 296 356 IPR001611 GO:0005515
Amo18g1876 957 CDD STKc_IRAK 689 944 - -
Amo18g1876 957 Pfam Malectin domain 421 604 IPR021720 -
Amo18g1876 957 Gene3D Ribonuclease Inhibitor 48 210 IPR032675 -
Amo18g1876 957 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 310 366 - -
Amo18g1876 957 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 94 309 - -
Amo18g1876 957 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 399 937 - -
Amo18g1876 957 Gene3D Ribonuclease Inhibitor 286 405 IPR032675 -
Amo18g1876 957 SMART serkin_6 683 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1876 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Amo18g1876 957 Pfam Protein kinase domain 687 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1876 957 Gene3D Transferase(Phosphotransferase) domain 1 759 949 - -
Amo18g1876 957 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 94 309 - -
Amo18g1876 957 ProSiteProfiles Protein kinase domain profile. 683 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1876 957 SUPERFAMILY L domain-like 102 377 - -
Amo18g1876 957 ProSiteProfiles Leucine-rich repeat profile. 321 343 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1876 Amo-Chr18 42254476 42265747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1876 42 950 Receptor kinase-like Gene Family AT1G53420 54.107 0.0 930
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1876 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1876 - - ccaj:109799273 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1876 18 42254476 42265747 Amo18g1876 18 42254476 42265747 ECH
Amo18g1876 18 42254476 42265747 Amo07g2272 07 68431468 68441267 hybridization