Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1864 ATGTTGTGTTTCATGATTCTGTGGGAATCCCCTTGTAAAAATTTGGTTAGAGGAATTCCAAACATCAAGTTTGATAAGGATCTTACTTGTGACGCTTGTCAATTGGGCAAACAATTTATGTTGATGACATTGTATTTGGTTCGGCCAACATTTCCTTGTGTGAATTCTCTTTATGGAAATCGTGTAACAGGTTCAATCCCAAAGGAACTAGGAAATATAACAACTCTCAAAAGTTTTTTAGTGGATAGGGTCCTGGAGTTCAATCAATTATCTGGAAATCTACCTACGGAGCTTGGGAGCCTTCCCCAAATTGAAACACTACTTCTTACTTCCAATAATTTCACTGGAGAGTTGCCTGCATCATTTGCTAACCTCACTACACTGAAGAACATTCGACTAGGTGACAATCAATTCTCTGGATCAATACCCAATTTTATTCAGAACTGGAGAAGTGTTGAGACAATGGTAATCCAGGGTAGTGGCTTCAGTGGGCCAATTCCTTCAGGAATTTCACTTATGAAGAACCTTAATGACTTGAGAATTAGTGACTTGAATGGATCCGATTCACCTTTTCCCCAACTTGATAGAATCACAAATTTGCAGACACTAATGTTGAGGAGTTGCAATATCATTGGAGCAATGCCTGAAAATCTTGGGAACTTGACTAATTTGAAAGTTCTAGATCTCAGCTACAACAAATTAAGTGGGCAGATTCCGAGCAGCTTTGCTGAACTACAGAAAATGGACATGCTATTTTTAACTAGGAACCTTCTAACTGGACCACTGCCCGATTGGATATCTAAACCTGATTTTGTAGATCTCTCATTTAACAACTTCAGCATAAGAAAGTCAGAGGAACCAGGTTGTCAACAGGGAAGCACGAACTTGTTTGCATCCTCCGTGAATGGCAACAGCATTTTGAGGCACAAGGAGAAATGGAGATTATCCTTTCACTTTTTGCCATACTTTCATGAAGAATGTATCAAACTCAAGACTAAGATTTCATTCATTCCTAAAAGGGAAGATAAAAAGAAGCAACAGACACAGACTGCTCACCGATTTCTGCTTATCCTAGCTTGGTACTCTCTCTATATAAATTGTGGTGGAAAGCAAGTAGTTTCTATTGGAAATAAGACATATGATGATGATTCGGGTACGACTGGACCAGCAAGATTTCTCTCTGAAGGAACAAACTGGGCACTCATTACCACTGGTCACTTCTTCGACAGTGGTCGTGCAGACTACTACACATGGTCTACTACAAACAAACTTGCAATGGAAAATGATGAACTGTATAGGGATGCACGTGTTTCTCCCGTTTCTCTGACTTATTATGCATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTTCATTTTGCGGAGATAATGTTTACAGATGATAAAACATATAGCAGTCTGGGAAGGCGTGTATTTGACATCTACATTCAGAGAAAGTTAGTGTTGAAGGATTTCAATATTGCAAAGGAAGCAGGGGGTGTTGGGAAGGCAGTAATAAAAAATTTCACTGCTGTTGTGAATGCTAAAGCCTTGGAGATCCGTTTATATTGGGCTGGAAAAGGGACAACTACTATTCCATTTGGATCAGTATACGGTCCTCTTATATCAGCTATATCTGTTGATCCAGATTTTGTACCACCTCCTCCTACGGTGAATGGTGGTGGCTTGTCTGTAGGCGCTATTGTTGCCATTGTTGTTGCAGGAGCAATTATTATCATATTGATTTTTGGCATACTTTGGTGGAAGCACTGTTTTGAACAAAAAAGTTCAGTGCCTAAAGAACTCAAGGACATAAACTCACAAACTACCATATTCACATTAAGGCAAATAAGAGCAGCAACAAACAACTTTGATAGAGCCTTCAAGATTGGACAGGGAGGATTTGGTCCTGTGTACAAGGGTGTCTTATCAGATGGCACAAGAATTGCAGTTAAGCAACTTTCCGATAAATCAGTGCAAGGGAATCGTGAGTTTATAAATGAGATTGGAATGATTTCTGCCTTGCGGCACCCTTACTTGGTTAAACTCTATGGATTTTGTATGGAGGAGGATCAGTTGTTGCTTGTATATGAATACATGGAGAATAATAGCCTTGCACATGCTTTATTCGATGGAAATTATGACAGGAAAACTGAATTGAGATTACACTGGCAAACAAGACAGAGGATTTGTGTCGGTATTGCTAAAGGTTTGGCTTACCTTCATGGAGAATCAAGATTGAAGATCGTTCATAGGGACATTAAAGCCACCAATGTGTTGCTGGATAAAGATCTCAACCCGAAGATATCAGATTTTGGTTTGGCCAAGCTTGATGAACAAAACAAAACACACATAAGCACCAGAATAGCGGGAACTTATGGGTACATCGCTCCGGAGTATGCGATGCATGGTTATTTGACGGACAAAGCTGATGTTTATAGTTTTGGAATAGTCGCTTTGGAAATAGTTAGTGGGAAGAGCAATACGCTTACCAACCCCACAGATGAATTCTTCTCTCTACTTGATTGGGCAAATCTCTTGAAAGAAAAAGGCAATCTATTGGAACTTGTTGATGGGAGGTTGGGTGAAGACTTAAACAAAGAGGAGGCATTGGTGATGATCAAAGTGGCTCTTCTATGTACCAATGCCTCTCCGGTGCTCCGGCCCACCATGGCTTCAGTGGTAATGATGCTTGAAGGAAGCACAGTTGTTCCAGATGTTATGCCAGGCACAAATGATTTATTGGATGAGAAGAAATTTGAGATGATGAGACAACATTACCAACAACATAGGGGAGAGAGAGAGATAAGTGAGACTCCAAGCTACAGTATCTCAGTTGGTGAAACTAGTGCAATTGTAACTGACACTGACTCTTCTTTTTTGAATGCCAGAGATTAA 2898 0.3999 MLCFMILWESPCKNLVRGIPNIKFDKDLTCDACQLGKQFMLMTLYLVRPTFPCVNSLYGNRVTGSIPKELGNITTLKSFLVDRVLEFNQLSGNLPTELGSLPQIETLLLTSNNFTGELPASFANLTTLKNIRLGDNQFSGSIPNFIQNWRSVETMVIQGSGFSGPIPSGISLMKNLNDLRISDLNGSDSPFPQLDRITNLQTLMLRSCNIIGAMPENLGNLTNLKVLDLSYNKLSGQIPSSFAELQKMDMLFLTRNLLTGPLPDWISKPDFVDLSFNNFSIRKSEEPGCQQGSTNLFASSVNGNSILRHKEKWRLSFHFLPYFHEECIKLKTKISFIPKREDKKKQQTQTAHRFLLILAWYSLYINCGGKQVVSIGNKTYDDDSGTTGPARFLSEGTNWALITTGHFFDSGRADYYTWSTTNKLAMENDELYRDARVSPVSLTYYAFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYIQRKLVLKDFNIAKEAGGVGKAVIKNFTAVVNAKALEIRLYWAGKGTTTIPFGSVYGPLISAISVDPDFVPPPPTVNGGGLSVGAIVAIVVAGAIIIILIFGILWWKHCFEQKSSVPKELKDINSQTTIFTLRQIRAATNNFDRAFKIGQGGFGPVYKGVLSDGTRIAVKQLSDKSVQGNREFINEIGMISALRHPYLVKLYGFCMEEDQLLLVYEYMENNSLAHALFDGNYDRKTELRLHWQTRQRICVGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEQNKTHISTRIAGTYGYIAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTLTNPTDEFFSLLDWANLLKEKGNLLELVDGRLGEDLNKEEALVMIKVALLCTNASPVLRPTMASVVMMLEGSTVVPDVMPGTNDLLDEKKFEMMRQHYQQHRGEREISETPSYSISVGETSAIVTDTDSSFLNARD* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1864 965 SUPERFAMILY Protein kinase-like (PK-like) 606 900 IPR011009 -
Amo18g1864 965 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 211 268 - -
Amo18g1864 965 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 56 211 - -
Amo18g1864 965 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 211 268 - -
Amo18g1864 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Amo18g1864 965 SUPERFAMILY L domain-like 56 308 - -
Amo18g1864 965 Gene3D - 361 549 - -
Amo18g1864 965 ProSiteProfiles Leucine-rich repeat profile. 223 245 IPR001611 GO:0005515
Amo18g1864 965 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 359 921 - -
Amo18g1864 965 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 56 211 - -
Amo18g1864 965 Pfam Leucine rich repeat 198 258 IPR001611 GO:0005515
Amo18g1864 965 Pfam Malectin domain 362 545 IPR021720 -
Amo18g1864 965 ProSiteProfiles Protein kinase domain profile. 624 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1864 965 Pfam Protein kinase domain 628 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1864 965 CDD STKc_IRAK 630 900 - -
Amo18g1864 965 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 359 921 - -
Amo18g1864 965 SMART serkin_6 624 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1864 965 Gene3D Transferase(Phosphotransferase) domain 1 700 906 - -
Amo18g1864 965 Gene3D Phosphorylase Kinase; domain 1 588 699 - -
Amo18g1864 965 Gene3D Ribonuclease Inhibitor 54 312 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1864 Amo-Chr18 41918398 41932608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1864 50 904 Receptor kinase-like Gene Family AT1G53420 53.372 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1864 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1864 - - ccaj:109799273 1129.01