Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1857 ATGGTATTTGGTATAGCTTGGTGGAGAGGATGTTTAGGACAAAACAGTTCATTACATAGAGACCTACAGGGTTTGGATCTAAAAACCGGCATATTTACCTTAAGGCAAATCAAAGCAGCAACAAACAACTTTGATATTGCTTGTAAGATTGGAGAAGGAGGGTTTGGTCCAGTATATAAGGGTATTCTTCCAGATGGCACAGCAATAGCAGTTAAACAGCTTTCTTCTAGATCGAAGCAGGGGAATCGCGAGTTCACAAATGAGATTGGCATGATTTCTGCTTTGCAACACCCATGTCTAGTTAAGCTCTATGGCTGTTGTATGGAAGGAGATCAAATGTTGTTGATATATGAATATATGGAAAACAATAGCCTTGCCAGTGCTTTGTGGGGCAAAGAGAAAACTCAACTGAAATTGGACTGGTCAACAAGGCGCAAGATTTGTATAGGCGTTGCTAAAGGCTTGGCTTACCTCCATGGAGAGTCAAGATTAAAAATAGTTCATAGGGACATCAAGGCTACTAATGTGTTGCTGGATAAAGATCTAAACCCAAAGATATCGGATTTCGGTTTAGCCAAGCTTGATGAAGAGGGTCAAACACACATAAGCACTAGAGTGGCTGGCACTTATGGATATATGGCACCCGAATATGCAATGCGTGGTTATTTGACAGACAAAGCAGATGTGTATAGTTTCGGAATTGTTGCCTTGGAAATAGTTAGCGGCAAAAGCAACAACATGGGCTGGCAAAGGGAAGAATGCTTCTCTCTTTTTGACTGGGCTCTTCTCTTGAAAGAGAAAGGTGATCTAATGGACCTAGTTGATGAGAGGTTGGGTTCACACTACAAAAAAGATGAAGCAATGCTCATCATCAACGTGGCTCTTCTCTGCACAAATACCTCTCCATTGAACCGGCCAACCATGTCGTCAGTGGTAAGCATGCTCAAAGGCAAAACCGCTGTACAAGAAGTGGTGCCGGACACGACGCAGGTATTTGGCGAGAAAAAGTTAGAGATGATCCGAGAGTATTACCAACAGAAGGGGAAAGATAAGATTCCAGACACTGAAGATGTGAGCACATCAACTAATGAAACTGCTGTATTTGTAGCTAATTCAGAAGACAATTCAATCAACATGGATTCTTCTTATTGGGAAAAAAGTGGTAGATGA 1170 0.4171 MVFGIAWWRGCLGQNSSLHRDLQGLDLKTGIFTLRQIKAATNNFDIACKIGEGGFGPVYKGILPDGTAIAVKQLSSRSKQGNREFTNEIGMISALQHPCLVKLYGCCMEGDQMLLIYEYMENNSLASALWGKEKTQLKLDWSTRRKICIGVAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEGQTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNNMGWQREECFSLFDWALLLKEKGDLMDLVDERLGSHYKKDEAMLIINVALLCTNTSPLNRPTMSSVVSMLKGKTAVQEVVPDTTQVFGEKKLEMIREYYQQKGKDKIPDTEDVSTSTNETAVFVANSEDNSINMDSSYWEKSGR* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1857 389 SMART serkin_6 44 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1857 389 SUPERFAMILY Protein kinase-like (PK-like) 30 315 IPR011009 -
Amo18g1857 389 CDD STKc_IRAK 50 317 - -
Amo18g1857 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Amo18g1857 389 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 343 - -
Amo18g1857 389 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 343 - -
Amo18g1857 389 Pfam Protein tyrosine and serine/threonine kinase 47 315 IPR001245 GO:0004672|GO:0006468
Amo18g1857 389 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Amo18g1857 389 Gene3D Transferase(Phosphotransferase) domain 1 120 330 - -
Amo18g1857 389 ProSiteProfiles Protein kinase domain profile. 44 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1857 Amo-Chr18 41761502 41763716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1857 1 350 Receptor kinase-like Gene Family AT1G53420 64.689 2.59e-161 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1857 PK_Tyr_Ser-Thr 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1857 - - gmx:100786496 597.43