Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1852 ATGGGGTGGCGGCAGTGGGGTTTGGTGGTTGTGGAGGGAGGAGGAAAGGGGAGAAGGGGAAGGGAAGAAGGGGAGGGAGGAAAAGAAGAAGGGGGCATCAGCGGTCGGGTGCGGCGCGGCGGTCGGGTCTGGGCGGCCAGGAGTGGTGGTGGTTGGGGAATGGGAGAAGAGAGGTTGCAGAGGGGGTGGGGGGCTTCTAATGAAAATTTTGAATCTCTGAGACTTAATAAGTATGTTCCATCGTGCATTCAACCTCTGGAAGTCATGATTCAGGTTCTTGCTTTCAATGGTAAGCCTGTGAAGAATCTGAAGGGCTTGGCCACCATGGTTGAGAACTATGATGATGAGTTTTTAAAGTTTGATCTAGAATACCAACAGGATGTGACAGCAACTAAAAGAAATGAATTTGAGGATTATTTGAAGCGAGAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATAGGACAGGCAAAACAGCTGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGAAATAA 597 0.4724 MGWRQWGLVVVEGGGKGRRGREEGEGGKEEGGISGRVRRGGRVWAARSGGGWGMGEERLQRGWGASNENFESLRLNKYVPSCIQPLEVMIQVLAFNGKPVKNLKGLATMVENYDDEFLKFDLEYQQDVTATKRNEFEDYLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNRTGKTAAFCIPALEKIDQK* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1852 198 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 125 197 - -
Amo18g1852 198 MobiDBLite consensus disorder prediction 15 33 - -
Amo18g1852 198 Gene3D - 81 139 IPR046449 -
Amo18g1852 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 196 IPR027417 -
Amo18g1852 198 Pfam DEAD/DEAH box helicase 158 195 IPR011545 GO:0003676|GO:0005524
Amo18g1852 198 Gene3D - 140 198 IPR027417 -
Amo18g1852 198 Pfam PDZ domain 90 128 IPR041517 -
Amo18g1852 198 MobiDBLite consensus disorder prediction 14 33 - -
Amo18g1852 198 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 125 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1852 Amo-Chr18 41641341 41647373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1852 136 196 Eukaryotic Initiation Factors Gene Family AT5G11200 46.774 1.25e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1852 K12614 - aip:107611967 221.476