Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1842 ATGAATTTTTCTCCTCTTTTCTACTTTTGGCTTCTTGCTTTTTGTTGCTTCGCTTTTTTGGCTAATGGAGCTACTCTCGTAGAAGATGAAGTGGAAGTGATGAAAGAGATAGCAAAGAAGGTTGGGAAGAATGACTGGAACTTCAGCGTGGATCCATGCAGTGGATTAGAGAACTGGAACTCATCAAACGCAGTCAAAGGAATGCTAATAAATGCAGTGACATGTGACTGCTCCTTTGCCAATGCCAATGTTACTGTTTGCCATGTTGTTAGCATTGTTCTAAAGTACCAGAATCTTACGGGCACACTCCCAAGTGAACTAGTGAAGTTGCCATACCTCCAAGAAATTGACCTCACCCGCAACTACCTTAACGGCACAATTCCACCACAATGGGGCTCCATGAAACTTGTCAACATTTCCCTTCTTGGAAATCGACTAACAGGTTCAATTCCAAAGGAGTTGGGAAACATTACCACCCTGAAAAGTTTGGTTTTGGAGTTCAATCAACTCACCGGAGAGCTTCCTCCTGAGCTTGGAAATCTTTCCCAGCTTGAAAGACTGCATCTTACTTCGAACCATTTTACTGGGAATCTACCTGCTACATTTGCTAAGCTCACTAAATTGAATCACGTTCGACTAGGCGATAATCAATTTTCTGGAACTATACCAAATTTTATTCAGAGCTGGACTACTCTTCAGAGGCTGGTGGTGCAAGGGAGTGGTATGAGTGGACCAATTCCTTCTGGAATTTCACTTTTGAAAAACCTCACCGACTTGAGAATCGCTGACTTGAAAGGACCAGGATCTTATTTTCCACCACTTAGTAACTTGACAAATCTAGAAACATTAGTACTGAGGAGTTGTAATCTGATAGGAACAGTGCCTGACTATCTAGAGAATGTGACTACACTAAAATCACTTGCATGCATCAACAATCAACATGCTTCTCAAGACCTTAGTTTTAACAAATTAAGTGGAACCATTCCAAGCTCCTTCAGTCGCCTATTGAACATGAACATACTGTACTTAACTGGAAACCTTTTTACTGGACCGCTACCTAATTGGATAGCTAACCCAGACTATACAGATCTTTCATATAACAACTTCAGCATCAAAGAGCCAGAGCTGTTGACTTGTCAACAAGGAAGCGTGAACTTGTTTGCATCATCTATGAAGGAACATAACTTGGGAGTTGTTCCATGTTTGGGAAACATTAATTGTTCTAAACCTTCATATTCTCTCCATATAAATTGCGGTGGGAAACTCATAACTTCTAGTGGGAATATTACATATGATGAAGATACACAAGAAGCTGGACCGGCAAGATCTCTTCGTGCCGGATCAAACTGGGCAGTTAGCAACACTGGTCACTTCTTTGATAGTAGTTTTGGGGACTATTATACATGGTCTAATACATCTAAGCTTACCATGAACAATGCTGAATTGTACACGAATGCACGTGTTTCTGCACTTTCTCTGACATATTATGGTTTTTGCATGAGAAATGGAAGCTACACAGTAAATCTCCATTTTGCTGAGATAATGTTTACAGATGATCAAACATATAGCAGCCTTGGAAGGCGTGTATTTGACATCTATATTCAGAAGAAATTGGTCCTAAAAGATTTTGATATTGCAAAAGAAGCAGGAGGAGTTTGTAAGGCAATCATAAAGAAATTTARRGCTAATGTGACCYGCAGCACCTTGGAGATTCGCTTACAATGGGCTGGGAAAGGGACAACAGCTATTCCATTTGGATCAGTATATGGTCCTCTAATATCAGCTATATCTGTAAATCCTGACTTTATGCCACCAGTGGAAAAAGAAACTAACAAAAGTGGAAGTGGCATATCTGTGGGGGCTATAGTTGTAATTGTAATTGCTGGAGCACTTGTTATCGTCTTCGTATTTGGTATATCCTGGCGGCGAGGATGTTCAGGACAAAAAGGTTCATTATATAAAGATCTACAGGGTTTGGATCTAAAAACCGATGTATTTACCTTGAGGCAAATCAAAACAGCAACTAACAATTTCGATATTGCTTATAAGATTGGACAAGGAGGGTTTGGTACTGTTTACAAGGGTGTTCTTTCAGATGGCACAGTAGTGGCAGTTAAACAGTTTTCTTCTAAATCGAGGCAAGGGAATCGCGAGTTCATAAATGAGATTGGCATGATTTCGGCTTTGCAACACCCCTGTCTAGTTAAGCTCTATGGCTGTTGTATGGAGGGAGATCAATTGTTGTTGATATACGAATATATGGAAAACAATAGCCTTGCTCGTGCTTTGTTTGCCCAAGAAAAAGGTCAACTGAAATTGGATTGGTCAACAAGGCGCAAGATTTGTCTTGGCGTTGCTAAAGGCTTGGCTTACCTCCATGGAGAGTCAAGGTTAAAGATAGTTCATAGAGATATCAAGGCCACCAATGTATTACTGGATAAAGATCTAAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGATGATGGACTTACCCACATAAGCACTAGAGTGGCTGGCACCTATGGATATATGGCTCCAGAATATGCAATGCGCGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAGTAGTTAGTGGCAAAAGCAACAATATGAACTGGCAAAAGGAAGAATGCTTTTCTCTTCTTGATTGGGCTCTTCTCTTGAAAGAAAAAGGTGATCTATTGGACCTAGTTGATGAGAGGTTGGGTTCAGACTTGAACGAAAATGAAGCAATGCTCATCATCAATGTGGCTCTTCTATGCTCAAATTTCTCTTCATTGCACAGGCCAACCATGTCTTCAGTGGTAAGAATGCTCGAAGGCAAAAGCGCAGTTCAAGAGGCCATGCCGGACACAACCCAGGTATTCGATGAGAAGAAGTTAGAAATGATGAGAAACTGTTACCAACAGAGAGGAAAACATAAGATTCCAGACACTCATGAACATAGCACCTTAATAGTTGAAACTGCTGCTTTTATGACTAATTCAGAGGTCCATTCAGCCAACATGGATTCTTCTTCCTGGGAGGAAAGTACTAGATGA 3072 0.4053 MNFSPLFYFWLLAFCCFAFLANGATLVEDEVEVMKEIAKKVGKNDWNFSVDPCSGLENWNSSNAVKGMLINAVTCDCSFANANVTVCHVVSIVLKYQNLTGTLPSELVKLPYLQEIDLTRNYLNGTIPPQWGSMKLVNISLLGNRLTGSIPKELGNITTLKSLVLEFNQLTGELPPELGNLSQLERLHLTSNHFTGNLPATFAKLTKLNHVRLGDNQFSGTIPNFIQSWTTLQRLVVQGSGMSGPIPSGISLLKNLTDLRIADLKGPGSYFPPLSNLTNLETLVLRSCNLIGTVPDYLENVTTLKSLACINNQHASQDLSFNKLSGTIPSSFSRLLNMNILYLTGNLFTGPLPNWIANPDYTDLSYNNFSIKEPELLTCQQGSVNLFASSMKEHNLGVVPCLGNINCSKPSYSLHINCGGKLITSSGNITYDEDTQEAGPARSLRAGSNWAVSNTGHFFDSSFGDYYTWSNTSKLTMNNAELYTNARVSALSLTYYGFCMRNGSYTVNLHFAEIMFTDDQTYSSLGRRVFDIYIQKKLVLKDFDIAKEAGGVCKAIIKKFXANVTXSTLEIRLQWAGKGTTAIPFGSVYGPLISAISVNPDFMPPVEKETNKSGSGISVGAIVVIVIAGALVIVFVFGISWRRGCSGQKGSLYKDLQGLDLKTDVFTLRQIKTATNNFDIAYKIGQGGFGTVYKGVLSDGTVVAVKQFSSKSRQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAQEKGQLKLDWSTRRKICLGVAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDDDGLTHISTRVAGTYGYMAPEYAMRGYLTDKADVYSFGIVALEVVSGKSNNMNWQKEECFSLLDWALLLKEKGDLLDLVDERLGSDLNENEAMLIINVALLCSNFSSLHRPTMSSVVRMLEGKSAVQEAMPDTTQVFDEKKLEMMRNCYQQRGKHKIPDTHEHSTLIVETAAFMTNSEVHSANMDSSSWEESTR* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1842 1023 CDD STKc_IRAK 684 951 - -
Amo18g1842 1023 SUPERFAMILY L domain-like 76 313 - -
Amo18g1842 1023 ProSiteProfiles Protein kinase domain profile. 678 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1842 1023 SUPERFAMILY Protein kinase-like (PK-like) 662 957 IPR011009 -
Amo18g1842 1023 Pfam Malectin domain 413 596 IPR021720 -
Amo18g1842 1023 ProSitePatterns Protein kinases ATP-binding region signature. 684 706 IPR017441 GO:0005524
Amo18g1842 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 396 996 - -
Amo18g1842 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 291 - -
Amo18g1842 1023 Gene3D Phosphorylase Kinase; domain 1 648 753 - -
Amo18g1842 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 290 377 - -
Amo18g1842 1023 Gene3D Ribonuclease Inhibitor 199 264 IPR032675 -
Amo18g1842 1023 Gene3D Ribonuclease Inhibitor 42 198 IPR032675 -
Amo18g1842 1023 Gene3D Ribonuclease Inhibitor 265 384 IPR032675 -
Amo18g1842 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 290 377 - -
Amo18g1842 1023 Gene3D - 410 601 - -
Amo18g1842 1023 Gene3D Transferase(Phosphotransferase) domain 1 754 966 - -
Amo18g1842 1023 SMART serkin_6 678 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1842 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Amo18g1842 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 396 996 - -
Amo18g1842 1023 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 76 291 - -
Amo18g1842 1023 Pfam Protein kinase domain 681 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1842 Amo-Chr18 41463377 41474184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1842 20 984 Receptor kinase-like Gene Family AT1G53420 52.826 0.0 980
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1842 Pkinase 7.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1842 - - gmx:100786496 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1842 18 41463377 41474184 Amo07g2290 07 68743071 68759121 hybridization