Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1834 ATGGGGAGCGTTCACAAAAATTCAACAAAGAGTTCTATTGAATTTGATGATTTGAGTTTTGAGTATAGTGGTTCAAGTGAAGAAAATGATATAAATATATCTCAAAAGAAGGGTACAATTGATGAAGCTATGAAAATGGTTGATCGTGGAGATGGATTTGGTGAAGTTGAGAAGAAGTTAACTGAGTTGACCAAGGATGACATTTGGGGTATTGAGCATGATAGTGTAGAGCAGTGTGTTCAATTCTACAAAAATTATGCCAAAGTACATGGTTTTGTTGCAAGGTGTGATGAAAAGGGTTATGATTTCAACGGCAACCTTAACATGAGACAAATGGTTTGTAATAGAGAGGGTACACGGAGAAAGAAGTATCTGGAGATGGAGAATAGGAAAAGAGACCACAGGCCGATAACACGTGTAATGTGTCAAGCCAGAATTAGATTTCACTATGATATGAAATTGAGGAAGTGGAAAGTCACTGCATTTGAAGAGACTCACAATCATGACCTTATCCCACCTAAATATATACAATTTGTCCCTGCATATCGCGTAATGACCGAGGCCGACAAAGCACAAGCCAACAGTCTGCATGATTATGTGAGGCAATATCGGACAAATGAGCTATTATCTGATTTTAAGTCATTGTTCTCAAGTCCAGTTTTAACTACATGTTTCGAAGACATCGAAAAGGAAGCAGCCAATATTTTTACCCATAATATGTTTAAAGAGGTAAGGAATGAGATACTAGAAGCGAGTAAACTAAACGTTGTCGGCCATTCAAATAATGGTAACAAAATTGAGGTGAGAATGAACAAATATCAAGAGCCGGCTATTGAATATAAGGTTCGGTATGATAGAAGCACTAACAACTTTGCTTGTGATTGTCGATTATTTGAGAGCCGTGGTATCCCTTGTTCCCATATTTTTTGTACTATGAGACATGACCATATTAGCACTATTCCTAATACTCTTATTCACAAGAGGTGGACGAAAGATGCTAAAAAAGAATACATTAGTTCACTTACCGCCGAGGATATTGAATCTGAAAAGATTGCTGGTGTTAGGTACGGTGCTCTAGCGACGCTTTGTTTTACACTATGTGATAAAGCATCGAAACATCGAGATGACTTCATGGAAATCAGAGAAGACATTTTTGGATTGATTATGAAACTCCATAAAAGACACAATCCAAATGAGAAGCTTCCTTCTACCGCCAACTTGGTAGGTGACCCAAGTGTTGTGAAGACAAAAGGAGCCCCACGACAAACAACCAAGACTGCTAAGGCCCGTAAGTGTTCGCATTGTAAACAGATTGGTCATACGGTTCGTAGGTGTCCAAAACTATATGGTGGAGAATGCTCACTAAGTTTGAACGAAGAAAAATTGAATACTGACAATGACCAATCAAGTACAGAATCAAATGGTGTTACGGATATGTCTGATGAGGAAACAATACACCAATGTAATGAAAAACGTAGTGATTTATTTGAAAATATCCAGAAAAAAGTGAATAAGCCTCATGTCCAATCTACAGAAGTTCAAAGCAACCACTACAACGATAACAGAACAGAAAAGCCTAGTGCACAAACAAAAATAAATGCACCTGAAGCTGCTTTTGAGGACACAAAGAAGGATAGAATTTCAAGTGTCCAAAAGAGTAATAAAAGAAAGCGGTTAGATAATAATCGCATCGAAAAGGTTAGTTTGCCATGTTGTATTCTCATCAGTAGAAAACCAAATAAAGAAGATCATCAAGAAGTGTCCACCGAAATTGGAACTTATGGTGCTATATCCTCTACAAAGGGTTTTGAGAATTTTCAATACATGAATGGATTACCTATAGGAACTAACAACTCCATTTCAAAAAAAGCCAAAGCTGAAAGCAATCACACACCTCAATCACCATCTGACGACATTAGGGAAAACCTTGGCAGCGCTCAACAAAAATCAAATGTAACAAAAGCACAAGTGAAGAACACTCTGATGGAGGCCATCGAAATTTCGTCTAGGTTGGAATACACTTCAATTGATTCTATGAATTTTAAATTTTTTCCGTATTTTTCTTAA 2067 0.3725 MGSVHKNSTKSSIEFDDLSFEYSGSSEENDINISQKKGTIDEAMKMVDRGDGFGEVEKKLTELTKDDIWGIEHDSVEQCVQFYKNYAKVHGFVARCDEKGYDFNGNLNMRQMVCNREGTRRKKYLEMENRKRDHRPITRVMCQARIRFHYDMKLRKWKVTAFEETHNHDLIPPKYIQFVPAYRVMTEADKAQANSLHDYVRQYRTNELLSDFKSLFSSPVLTTCFEDIEKEAANIFTHNMFKEVRNEILEASKLNVVGHSNNGNKIEVRMNKYQEPAIEYKVRYDRSTNNFACDCRLFESRGIPCSHIFCTMRHDHISTIPNTLIHKRWTKDAKKEYISSLTAEDIESEKIAGVRYGALATLCFTLCDKASKHRDDFMEIREDIFGLIMKLHKRHNPNEKLPSTANLVGDPSVVKTKGAPRQTTKTAKARKCSHCKQIGHTVRRCPKLYGGECSLSLNEEKLNTDNDQSSTESNGVTDMSDEETIHQCNEKRSDLFENIQKKVNKPHVQSTEVQSNHYNDNRTEKPSAQTKINAPEAAFEDTKKDRISSVQKSNKRKRLDNNRIEKVSLPCCILISRKPNKEDHQEVSTEIGTYGAISSTKGFENFQYMNGLPIGTNNSISKKAKAESNHTPQSPSDDIRENLGSAQQKSNVTKAQVKNTLMEAIEISSRLEYTSIDSMNFKFFPYFS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1834 688 MobiDBLite consensus disorder prediction 398 426 - -
Amo18g1834 688 MobiDBLite consensus disorder prediction 622 652 - -
Amo18g1834 688 MobiDBLite consensus disorder prediction 503 530 - -
Amo18g1834 688 Pfam FAR1 DNA-binding domain 81 171 IPR004330 -
Amo18g1834 688 SMART 26again6 291 318 IPR006564 GO:0008270
Amo18g1834 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 217 342 - -
Amo18g1834 688 SUPERFAMILY Retrovirus zinc finger-like domains 419 450 IPR036875 GO:0003676|GO:0008270
Amo18g1834 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 217 342 IPR031052 GO:0006355
Amo18g1834 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 184 IPR031052 GO:0006355
Amo18g1834 688 MobiDBLite consensus disorder prediction 502 559 - -
Amo18g1834 688 MobiDBLite consensus disorder prediction 537 559 - -
Amo18g1834 688 MobiDBLite consensus disorder prediction 462 482 - -
Amo18g1834 688 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 68 184 - -
Amo18g1834 688 ProSiteProfiles Zinc finger SWIM-type profile. 280 316 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1834 Amo-Chr18 41207738 41211919 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1834 FAR1 1.4e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1834 - - ahf:112748201 765.763