Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1813 ATGAAGAAATTTACAAGTTTAGATATCCAAACAAGTTTATTTTCTTTACGCCAAATCAAAATAGCAACAAATAATTTTGATATATCCAACAAGATTGGAGAAGGAGGATTTGGCCCCGTGTACAAGGGAGAGTTATCTAATGGTATAGTAATAGCAGTAAAGCAGCTTTCTTCAAAATCAAGGCAAGGGAATCGAGAGTTCTTAAATGAAATAGGCATGATTTCTGCTTTACAACATCCTTGTCTCGTTAAACTCTATGGATGCTGTGTTGAAGGAGATCAACTGTTGTTGGTATATGAATACATGCAAAATAATAGTCTTGCTCGTGCTTTATTTGGTCCAAAGGAACACCAAATAAAATTGGACTGGCCAACAAGACAGAACATTTGTATTGGTATTGCTAGAGGCTTAGCATACCTCCATGAAGAATCAAGATTGAAGATAGTTCATAGAGACATTAAAGCCACAAATGTCTTGCTTGATAGAGATCTTAATCCGAAGATATCTGATTTTGGTTTGGCCAAACTTGATGAAGAGGACAATACCCATATTAGCACCCGAATAGCAGGAACATATGGATATATGGCTCCAGAATATGCAATACATGGTTATTTAACTGACAAAGCAGATGTCTATAGTTTTGGAATTGTTGCTTTGGAAATCATTACTGGGAAGACTAATACTACTCTGCGGCAGAAAGAAGAAGTAATTTATCTGCTTGATCTGGCACGTTTGTTGAAAGAGAAAGGCAATCTAATGGAGCTAGTTGATAGAAGATTGGGCTCAAACTTTGATAAAGAGGAAGCCATGATAATGATTAAGGTGGCTCTCCTATGTACTAATGTGTCTGCAACACTTAGACCAAACATGTCTTCAGTGGTAAGTATGTTAGAAGGCAAAATTATAGTTCAAGAACCAATTTTTGATAAGCCAAGTGAGGCATTGGATGAGAAGAAATTGGAAGCAATGAGATTGTATTGTTTTGAAGATCAAAGTATTTCAACGGAGGATCCATGGACTACTTCGTCTACTTCTGCAAGAGATTTGTATCCATTAAATTTGGACTCTTCTTACTTAGAGAAGAGAGAATATCAAAATTATTAA 1104 0.3587 MKKFTSLDIQTSLFSLRQIKIATNNFDISNKIGEGGFGPVYKGELSNGIVIAVKQLSSKSRQGNREFLNEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMQNNSLARALFGPKEHQIKLDWPTRQNICIGIARGLAYLHEESRLKIVHRDIKATNVLLDRDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAIHGYLTDKADVYSFGIVALEIITGKTNTTLRQKEEVIYLLDLARLLKEKGNLMELVDRRLGSNFDKEEAMIMIKVALLCTNVSATLRPNMSSVVSMLEGKIIVQEPIFDKPSEALDEKKLEAMRLYCFEDQSISTEDPWTTSSTSARDLYPLNLDSSYLEKREYQNY* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1813 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 335 - -
Amo18g1813 367 Gene3D Phosphorylase Kinase; domain 1 1 101 - -
Amo18g1813 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Amo18g1813 367 Gene3D Transferase(Phosphotransferase) domain 1 102 309 - -
Amo18g1813 367 SUPERFAMILY Protein kinase-like (PK-like) 8 298 IPR011009 -
Amo18g1813 367 CDD STKc_IRAK 32 299 - -
Amo18g1813 367 SMART serkin_6 26 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1813 367 Pfam Protein tyrosine and serine/threonine kinase 28 242 IPR001245 GO:0004672|GO:0006468
Amo18g1813 367 ProSiteProfiles Protein kinase domain profile. 26 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1813 367 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1813 Amo-Chr18 40002574 40005133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1813 2 335 Receptor kinase-like Gene Family AT1G53420 68.639 1.82e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1813 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1813 - - cam:101501658 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1813 18 40002574 40005133 Amo18g1813 18 40002574 40005133 ECH
Amo13g2376 13 41291005 41296092 Amo18g1813 18 40002574 40005133 PCT