Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1786 ATGGAGAACAATAATGAGGTTTCAAAGGCAAAAATGATGGAGCAAGAAATAATGAGAGGGCGTGACATGGCAAACCAGTTACTTCAAGTTGTTGTTGATAGTAGAAATGAAGAAGAAATTGAAAAGTCAACGGTGATGCCTTATGCTGAAGATGCTGTGCGCAAAGTTCTCAGATCATTCACAAACACACTCTTGCTATTGAACAATGAAGACACAAGAGAAAGTAGTTGCAACAGCAACAACAAGAAGAAGAAGAGTAGTTCCAGCAATAAAAGTCAAAAAGGGTGCCACAAGAGAAAATCAGTTGCACCAAGCTGGCAGACTGACAGCTCAATTCTGTGTGAGGATGGCCATGCATGGAGAAAGTACGGACAGAAGAAGACCATCAATTCCAATTACCTCAGGAGCTACTACAAGTGCAGCTACAAGAATGAAAAAGATTGCAAAGCCATCAAACATGTTCAGAGAATCCAAGAGGATCCTCCATTATACCGTACAACCTATTATGGCCATCACACTTGCAAATGCTCTCTCATCACTTACCCACACACAAGACTAGAACCTGCTTCTTCTTTTGAATCTTCTATGTTACTATCCTTTAGTAGTGATCACAATACCAATAATACCCTTCCAGTAATAACCAAACAAGAAGCACAACCTTTTCCTTCGTCATCAACAAAACAAGAGCCCATGGAAGTAGTGGTTTCTAATGACCGTATTGACCACAACCAATCTTCCTCATCAAATGACTACGATCTCTTAAGTGATTATGAACTTTATTTCAATTATTAG 792 0.3939 MENNNEVSKAKMMEQEIMRGRDMANQLLQVVVDSRNEEEIEKSTVMPYAEDAVRKVLRSFTNTLLLLNNEDTRESSCNSNNKKKKSSSSNKSQKGCHKRKSVAPSWQTDSSILCEDGHAWRKYGQKKTINSNYLRSYYKCSYKNEKDCKAIKHVQRIQEDPPLYRTTYYGHHTCKCSLITYPHTRLEPASSFESSMLLSFSSDHNTNNTLPVITKQEAQPFPSSSTKQEPMEVVVSNDRIDHNQSSSSNDYDLLSDYELYFNY* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1786 263 SMART WRKY_cls 114 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1786 263 Pfam WRKY DNA -binding domain 115 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1786 263 MobiDBLite consensus disorder prediction 71 103 - -
Amo18g1786 263 MobiDBLite consensus disorder prediction 71 86 - -
Amo18g1786 263 ProSiteProfiles WRKY domain profile. 109 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1786 263 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 263 - -
Amo18g1786 263 Gene3D WRKY domain 101 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo18g1786 263 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 263 IPR044810 GO:0003700
Amo18g1786 263 SUPERFAMILY WRKY DNA-binding domain 110 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1786 Amo-Chr18 38941484 38944705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1786 3 174 WRKY Transcription Factor Family AT3G56400 32.984 1.55e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo18g1786 WRKY 1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1786 - - adu:110273813 398.282