LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo18g1786	ATGGAGAACAATAATGAGGTTTCAAAGGCAAAAATGATGGAGCAAGAAATAATGAGAGGGCGTGACATGGCAAACCAGTTACTTCAAGTTGTTGTTGATAGTAGAAATGAAGAAGAAATTGAAAAGTCAACGGTGATGCCTTATGCTGAAGATGCTGTGCGCAAAGTTCTCAGATCATTCACAAACACACTCTTGCTATTGAACAATGAAGACACAAGAGAAAGTAGTTGCAACAGCAACAACAAGAAGAAGAAGAGTAGTTCCAGCAATAAAAGTCAAAAAGGGTGCCACAAGAGAAAATCAGTTGCACCAAGCTGGCAGACTGACAGCTCAATTCTGTGTGAGGATGGCCATGCATGGAGAAAGTACGGACAGAAGAAGACCATCAATTCCAATTACCTCAGGAGCTACTACAAGTGCAGCTACAAGAATGAAAAAGATTGCAAAGCCATCAAACATGTTCAGAGAATCCAAGAGGATCCTCCATTATACCGTACAACCTATTATGGCCATCACACTTGCAAATGCTCTCTCATCACTTACCCACACACAAGACTAGAACCTGCTTCTTCTTTTGAATCTTCTATGTTACTATCCTTTAGTAGTGATCACAATACCAATAATACCCTTCCAGTAATAACCAAACAAGAAGCACAACCTTTTCCTTCGTCATCAACAAAACAAGAGCCCATGGAAGTAGTGGTTTCTAATGACCGTATTGACCACAACCAATCTTCCTCATCAAATGACTACGATCTCTTAAGTGATTATGAACTTTATTTCAATTATTAG	792	0.3939	MENNNEVSKAKMMEQEIMRGRDMANQLLQVVVDSRNEEEIEKSTVMPYAEDAVRKVLRSFTNTLLLLNNEDTRESSCNSNNKKKKSSSSNKSQKGCHKRKSVAPSWQTDSSILCEDGHAWRKYGQKKTINSNYLRSYYKCSYKNEKDCKAIKHVQRIQEDPPLYRTTYYGHHTCKCSLITYPHTRLEPASSFESSMLLSFSSDHNTNNTLPVITKQEAQPFPSSSTKQEPMEVVVSNDRIDHNQSSSSNDYDLLSDYELYFNY*	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo18g1786	263	SMART	WRKY_cls	114	176	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo18g1786	263	Pfam	WRKY DNA -binding domain	115	175	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo18g1786	263	MobiDBLite	consensus disorder prediction	71	103	-	-
	Amo18g1786	263	MobiDBLite	consensus disorder prediction	71	86	-	-
	Amo18g1786	263	ProSiteProfiles	WRKY domain profile.	109	177	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo18g1786	263	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	1	263	-	-
	Amo18g1786	263	Gene3D	WRKY domain	101	177	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo18g1786	263	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	1	263	IPR044810	GO:0003700
	Amo18g1786	263	SUPERFAMILY	WRKY DNA-binding domain	110	175	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo18g1786	Amo-Chr18	38941484	38944705	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo18g1786	3	174	WRKY Transcription Factor Family	AT3G56400	32.984	1.55e-29	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Amo18g1786		WRKY	1e-21	CL0274