Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1781 ATGATGATGTCGAGCTGCAGCATGGATGCTGGACCTGAGCAACTGTGCTACATACCCTGCAACTTTTGCAACATTGTTCTTGCGGTGAGCGTTCCATGCAGCAGCTTGTTCGACATGGTAACGGTTCGATGCGGTCACTGCACCAACCTCTGGTCCGTAAACATGGCTGCGGCCTTTCAATCACTGTCATGGCAAGATCTTCAGGGCCCTGGGCAGTGCAATCAGGAGTATAGGATTGACACAAATATTAATATGAATAATGGTGGCTCCTCTTCCAAATGCAACAATAGTAGTAGGCTTGCATCAATGCGTGCACCTACCAATCATGTTACTCAGGAAAGGGCTGTCAACCGCCCACCCGAGAAAAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATCCAGAGGATTAAGGCTAATAATCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCAGCAAAGAACTGGGCACATTTTCCTCYTATTCATTTTGGGCTAATGTTGGAGAGCAACAATCAAGCTAATAAGATGGATAATGCCTCTGAGAAGCATTTGATGTCAAGGGCTGCACCTGCACTGTTGAATAAATGA 606 0.4604 MMMSSCSMDAGPEQLCYIPCNFCNIVLAVSVPCSSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDLQGPGQCNQEYRIDTNINMNNGGSSSKCNNSSRLASMRAPTNHVTQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPXIHFGLMLESNNQANKMDNASEKHLMSRAAPALLNK* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1781 201 Gene3D High mobility group box domain 108 168 IPR036910 -
Amo18g1781 201 Pfam YABBY protein 12 171 IPR006780 GO:0007275
Amo18g1781 201 PANTHER AXIAL REGULATOR YABBY 5 3 189 - -
Amo18g1781 201 SUPERFAMILY HMG-box 116 164 IPR036910 -
Amo18g1781 201 PANTHER PROTEIN YABBY 6-RELATED 3 189 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1781 Amo-Chr18 38803004 38806193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1781 13 179 C2C2-YABBY Transcription Factor Family AT2G26580 72.455 1.05e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo18g1781 YABBY 1.8e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1781 K25796 - gmx:100499942 335.88