Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1766 GCGTGTGGTGCCTCTCCAATTTTCTCCCCCAATCTAGTGAACACTTTCAAAAACAACTCCACAATGGAGAATCATCATCATTATTCATCGAAGGGAAGAAGGGAAATAATGGAGCAAGAGCTACTTAGAGGGCGTGACGTCGCAAATCAATTGCTTCAACTTCTTGTTCATAGATCCAATAATAATGATGAACAAGGGTTGACGTTGATCTTGCCATTTGCTGAAGATCTTGTGCACCAAGTGCTAAGATCATTCACAAACACCCTTTTGCTCTTGAACATTTCCAATAATAGTAATAATAATATTGATGATGCAATTTTTCCCATCAAAGATTTATCTTCTTCTTCTTCCCCATCAAGTTGCCAAAAGCATGAAAATTTAGATGAGGCTTGCAAAAGCTTCCACACAAATAATCGAAGAGGGCGCTACAAGAGAAAAACAACTGCACCAACTTGGGAGAAGGACAATCCAATTTTACTTGAAGATGGCCATGCATGGAGAAAGTACGGACAAAAGAAGACAATGAATTCGAAATACCTCAGGAACTACTACAGGTGCAGTCATAAGTGTGATGAGGGTTGCCCAGCAATGAAACAAGTTCAAAGAATTCAAGAGAATCCCCCATTATACCGAACTACCTATTATGGTCATCACACTTGCAAGAACACTAATTATTATAATAACGAGGAATCAATTATTTTGGAACATGAATCCAAATCTTCAATGTTCCTTAGCTTCAATAATAACAATAACAATATCATCCCAAGCAGCAAAAAACAAATTTTGAGATCAACAAAACAAGAGGCAGTGGAATTAGTGATTCATGATCATCACGATGACCATAGTGTTGCTACTCATCAGAGTCAATTATATGATCACTATGAAGTTGATTTAGAATATTCTAGGCATAATCAAAATTCAAGGGGAAGAAAAGCAATAATAGAACAAGAGCTACTTAGAGGGCGTGACATGGCGAATCAATTGCTTGAAGTGCTTGTTGCTCATAATAACAAATCCAATAATCATCACTATCTAAATAGATCATATGATGATGATAAAGGGTTAATGGTACTATTACCATATGCTGAAGATCTTGTGCATCAAGTATTAAGATCATTCACGAATTCCCTTTTGATCTTGAACACTACTACTACCACTAAAAGTGATGCTATTGATCATGATGTTTTCTCCGATGGAAGGGTGGTTTTTGATTCTGCAAAATTCAGAGATTTCTCTTCTACTACTTCTTCTCCGAGTCTTCATCACACAAACAATAATCGATTAAGAAAATCATCTGTACCAACATGGGAGAAGGACAGTCCAATTTTAATTGAAGATGGACATGAATGGAGAAAATATGGACAAAAGATGACAATGAATTCAAAATACCTAAGGAATTATTATAGGTGCAGTCACAAGAATGATCAAGGTTGCCCAGCAACCAAAAAAGTGCAACAAATTCAAGACAATCCACCATTGTTCCGAACAAGCTATTTTGGTCATCACAATTGCAAAAGCATCACTTATAATGAGGAAACAATTTTGGCATCTGAATCTTTTTCCGAATCTTCTATCAAAGAACACCAATTTTCATCATCACAAGCTTTTGGATCAAAAAACTTCATCTCACAAAACCAATTATTACTATCCTCATCAGATTACTACCACCCATTATGTGTCTATGAAGAACTTGGTTTCGACTATTCTAGGCATCATGATCCTATGCTATCATCCACTGAAAAGGTTCAATTTGACAATAATGCTTTAGGGTGGGACTTATTGGATTATGATGGCTTGGCATGTTATGGTCAACAAAATTAA 1821 0.3619 ACGASPIFSPNLVNTFKNNSTMENHHHYSSKGRREIMEQELLRGRDVANQLLQLLVHRSNNNDEQGLTLILPFAEDLVHQVLRSFTNTLLLLNISNNSNNNIDDAIFPIKDLSSSSSPSSCQKHENLDEACKSFHTNNRRGRYKRKTTAPTWEKDNPILLEDGHAWRKYGQKKTMNSKYLRNYYRCSHKCDEGCPAMKQVQRIQENPPLYRTTYYGHHTCKNTNYYNNEESIILEHESKSSMFLSFNNNNNNIIPSSKKQILRSTKQEAVELVIHDHHDDHSVATHQSQLYDHYEVDLEYSRHNQNSRGRKAIIEQELLRGRDMANQLLEVLVAHNNKSNNHHYLNRSYDDDKGLMVLLPYAEDLVHQVLRSFTNSLLILNTTTTTKSDAIDHDVFSDGRVVFDSAKFRDFSSTTSSPSLHHTNNNRLRKSSVPTWEKDSPILIEDGHEWRKYGQKMTMNSKYLRNYYRCSHKNDQGCPATKKVQQIQDNPPLFRTSYFGHHNCKSITYNEETILASESFSESSIKEHQFSSSQAFGSKNFISQNQLLLSSSDYYHPLCVYEELGFDYSRHHDPMLSSTEKVQFDNNALGWDLLDYDGLACYGQQN* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1766 606 Pfam WRKY DNA -binding domain 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 Pfam WRKY DNA -binding domain 445 505 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 SUPERFAMILY WRKY DNA-binding domain 157 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 SMART WRKY_cls 160 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 SMART WRKY_cls 444 506 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 ProSiteProfiles WRKY domain profile. 439 507 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 304 586 - -
Amo18g1766 606 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 30 304 - -
Amo18g1766 606 ProSiteProfiles WRKY domain profile. 155 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 304 586 IPR044810 GO:0003700
Amo18g1766 606 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 304 IPR044810 GO:0003700
Amo18g1766 606 SUPERFAMILY WRKY DNA-binding domain 442 505 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 Gene3D WRKY domain 148 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo18g1766 606 Gene3D WRKY domain 431 506 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1766 Amo-Chr18 38480783 38491177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1766 308 504 WRKY Transcription Factor Family AT3G56400 32.338 9.20e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo18g1766 WRKY 7.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1766 - - aip:107610898 553.518