Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1740 ATGGCGTTTTCACCCACTGAAGGAGGATCGATTAGTACATTGACCAATCCAACACAAGGCGATGAACAATTCAGTGTGGGTGAATTAGACATTCAAGAACAAGTAGGGTGGAAGTTCGACGAAATTACCGATGTCGTTGTGACTAGAAAGGATGAGCTGGACGACGGACACCAGAAAGAACATGTGCTCTTTTTGGTATTGCCGGATCATAGTGGCGTAGGCGAAGAGGAAATTCCAGTCGTAGGAATGAGTTTTGGTTCGTTGCCTCTCGCACAGAAATTTTATGCAAACTATGCAAAGAAAGTTGGGTTCGTTACTAAAATCAGGAACACGAATTTTGACAAGACGCGGAAGGAATCAAAGATACCGGTTAATCAATCTATTTACTGCACGCGAGAAGGTTATCGAGAGTCTAGGGTGAACGCAGCAACTCGAGCAAACAGAATTACAGCCACGAGATGCAGAGCAAGGATGTATGTCGTGCTGGACAATGAGAATGAATGTTGGGTTGTGTCTAGATTAGAACTGAGGCATTCTCACCCCTGTTCGGCTGAGAAAGCTGTCCACTATCATGAAAATGTAGCTGAGTTTTCCACCTCTAACGACAACCTTTACGCGAATCGACGGAAGTGGGTTCCAATATTTTTCAAGAGTGAATTTTGGGCAGGCATGAGGAGTACACAGCGTAGTGAAAGTATGCACGCATTTTATGGTGGATACCTGCATTGCAAGAGTGGGTTGGTTCAGTTCGTCCATGAATACGACAATGTCCTTGGAACCAAGGAGCAAAAGGAGCTGGAAGATGATGCTGCAGACTCGAAAGGAGTCATCCCATGTATAGGGAGCACGGGCATTGAGAGACAGTTTCAGCAGGAATACACCAGTAGTATGTTCAGGATTCTTCAACTGGAGGGAGATACAATTTCTATTACAGTGGACGAGCAGAAGGTATTCTGGGGGAAGCCGGTCTACCATACTTTCAGGGTCGACTTTGACCCTTTGAGTCGAAAGGGTCAGTGCGAGTGCAACAAGTTTGAATCCGCTGGTATATTGTGTTGCCACACCCTTGCGGTCTGGTCATACTACAGAGTTGACATAGTACCGAGCTGCTATGTTCTTCCTCGATGGAGTAAGAATGTCATCCGCAAGCACACTTACATCAAGAGTAGCCATGACGTGGCTCGGAAGTTCTATAACGTTGCGCAGGAGTTTGTTGCTTGTGATGAGGAAGCAGCCATCTTGCGAGCTGCCCTTTGGGATGCAAAGTCCAAGCTGATTGATTACCGTGCCAGCATGCGTTCCACTACTGTTGCTGCGTCTCAGAATACCGTGCCCACACAGAGCACAGGCGGTGCGATTGTACATGACATACAGGGACCCTCAAGAGTCAAAACCAAAGGACGGCCTAAGGGTAAGAGACTTGGAGCAGAGTTGGACAAGTCAATTAAGAAATCAATGCAAAAAAGGAATAGGAAATCACACCCGGATGAGGTTGACCTTCCGTCAGATAATGATCATCATGGGTCCCTTAATAAAAGATTTGAGGATTCTACTATGTGGAACTCATCGGAAGGTGGCGGATTCATGCACCTGTTGAATTCCTTTAGGCATATATAG 1617 0.4613 MAFSPTEGGSISTLTNPTQGDEQFSVGELDIQEQVGWKFDEITDVVVTRKDELDDGHQKEHVLFLVLPDHSGVGEEEIPVVGMSFGSLPLAQKFYANYAKKVGFVTKIRNTNFDKTRKESKIPVNQSIYCTREGYRESRVNAATRANRITATRCRARMYVVLDNENECWVVSRLELRHSHPCSAEKAVHYHENVAEFSTSNDNLYANRRKWVPIFFKSEFWAGMRSTQRSESMHAFYGGYLHCKSGLVQFVHEYDNVLGTKEQKELEDDAADSKGVIPCIGSTGIERQFQQEYTSSMFRILQLEGDTISITVDEQKVFWGKPVYHTFRVDFDPLSRKGQCECNKFESAGILCCHTLAVWSYYRVDIVPSCYVLPRWSKNVIRKHTYIKSSHDVARKFYNVAQEFVACDEEAAILRAALWDAKSKLIDYRASMRSTTVAASQNTVPTQSTGGAIVHDIQGPSRVKTKGRPKGKRLGAELDKSIKKSMQKRNRKSHPDEVDLPSDNDHHGSLNKRFEDSTMWNSSEGGGFMHLLNSFRHI* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1740 538 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 203 419 IPR031052 GO:0006355
Amo18g1740 538 MobiDBLite consensus disorder prediction 459 511 - -
Amo18g1740 538 MobiDBLite consensus disorder prediction 1 21 - -
Amo18g1740 538 PANTHER OS03G0843700 PROTEIN 63 192 - -
Amo18g1740 538 MobiDBLite consensus disorder prediction 470 511 - -
Amo18g1740 538 Pfam FAR1 DNA-binding domain 93 182 IPR004330 -
Amo18g1740 538 ProSiteProfiles Zinc finger SWIM-type profile. 325 363 IPR007527 GO:0008270
Amo18g1740 538 PANTHER OS03G0843700 PROTEIN 203 419 - -
Amo18g1740 538 SMART 26again6 338 365 IPR006564 GO:0008270
Amo18g1740 538 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 192 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1740 Amo-Chr18 36142551 36146265 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1740 FAR1 3.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1740 - - ahf:112730161 652.514