Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1719 ATGATTCACAATGGAGTCTGTAACCTCCGCACCTGCCTCCGTCTCCCGGAGACCTCGCTTTCTCGATCACCACCGCTTTCCCTCGCTCTTCGCCGGCGATACCTTGCCGGCGCTTCCGCCGCCGCCAAGAAGGAGAAAGAGAAGGTGATAGTCATTTCCGGACCCACCGGTACCGGCAAGAGCCGCCTGGCTCTTGAGCTCGCCAAGCGCCTCAACGGGGAAATAGTCAGTGCCGACTCTATCCAGGTATATCGGGGTCTTGATATTGGATCTGCAAAGCCTTCCCAAAATGATAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCATCCATCTGAAGACTATTCTGTTGGACAGTTTTTCGAGGATGCAAGGCAAGCTACAAGATCTATTCTTGACAAAGGGCGTGTTCCCATAGTTGTCGGGGGCACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTATAGCTTCTCCGGAGATTGCATCCAAAGTACATCTAGAGTTGGCTGAACTACAGAGAAAAGAAGAATGGGATGCAGCTGTGCAATTGGTTGTAAAAGCCGGTGATCCGAAGGCCCAACTTTTACCAGTGAATGATTGGTATCGCTTACGGCGTAGCCTGGAAATTATTAAGTCCAGTGGGTCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGAAACAGGATGACTTTAGTGTTATTGATGGTTCTGAGTCATCTAGGGCAAACACAACAGAAGAAACCAATATGTCAGATTTGGACTACGAGTTTATGTGTTTTTTCCTTTCTGTCCAAAGACTTGACCTCTATAAATCACTTGATTATCGGTGTGAAGAAATGCTATTAGGAAGGGATGGGATTCTATCTGAGGCTCAGTGGCTTCTTAATTTGGGTCTTCTTCCAAATTCGAATTCTGCAACACGAGGAATTGGTTACAGACAAGCCATGGAGTACTTATTAAGTTGCAGAAAGCTAAATGGTCAGAGTTCAGTAGGAGAATTTTACAAGTTCTTATCTGAATTTCAAAAAGTATCACGGAATTTTGCGAAGAGACAGCTTACATGGTTTCGAAATGAAAAAATATATGACTGGCTTGATGCTTCTAAACCTCTGGAAACAGTACTCAACTTCATTGTTGATTCATACCAGAACAGGAATGGAAGGCTTGTTGTGCCCGAGAGTCTAAGAATGCCACGAGATATTTCTAATCACCGAGAAGCTAATTTAATTAAGTCCTACAGAACCAGAAATAGGCATTTTTTGAAGCGGGAAGATTGTTCTCATATTCTGGACTGGATAGGGGAGACCCAAAGTGGGATACAAAGACTGGAAAATCCAAGAGAGGCAAATTATGAGAGAGTCTGA 1389 0.4449 MIHNGVCNLRTCLRLPETSLSRSPPLSLALRRRYLAGASAAAKKEKEKVIVISGPTGTGKSRLALELAKRLNGEIVSADSIQVYRGLDIGSAKPSQNDRKEVPHHLVDILHPSEDYSVGQFFEDARQATRSILDKGRVPIVVGGTGLYLRWFIYGKPDVPIASPEIASKVHLELAELQRKEEWDAAVQLVVKAGDPKAQLLPVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFRKQDDFSVIDGSESSRANTTEETNMSDLDYEFMCFFLSVQRLDLYKSLDYRCEEMLLGRDGILSEAQWLLNLGLLPNSNSATRGIGYRQAMEYLLSCRKLNGQSSVGEFYKFLSEFQKVSRNFAKRQLTWFRNEKIYDWLDASKPLETVLNFIVDSYQNRNGRLVVPESLRMPRDISNHREANLIKSYRTRNRHFLKREDCSHILDWIGETQSGIQRLENPREANYERV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1719 462 Coils Coil 456 462 - -
Amo18g1719 462 CDD NK 49 90 - -
Amo18g1719 462 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 39 446 IPR039657 -
Amo18g1719 462 TIGRFAM miaA: tRNA dimethylallyltransferase 49 226 IPR018022 GO:0008033
Amo18g1719 462 Pfam IPP transferase 82 367 - -
Amo18g1719 462 Gene3D - 46 434 IPR027417 -
Amo18g1719 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 208 IPR027417 -
Amo18g1719 462 Hamap tRNA dimethylallyltransferase [miaA]. 49 384 IPR018022 GO:0008033
Amo18g1719 462 Gene3D - 158 228 - -
Amo18g1719 462 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 39 446 - -
Amo18g1719 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 285 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1719 52 369 C2H2 Transcription Factor Family AT2G27760 25.982 1.12e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1719 K00791 - gmx:100808814 656.366