Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1688 ATGGAAAGTATGCATAAATTTGTTCCTCTCGTTTGTCTTATTAGTATGAATATGGTTAAAATAGTGTTAGGAACAGCAACAAAATTTCATGAGGGTGATGCTAGCATGGATGTGAAAAAGGGCATAGTAGGAGTTGTTGCAGACTATAATGATGGAAGTGGAAAAGAGGAAATAGTGGCTATTAAGATGGCATTGGAGGATTTCTATCATTACACCAATCGAAGCTTTGGTCTTCACATAAGGGACTCTCATGGGGATCCCCTTAAAGCTGCTCTTGCAGCAAGGGACCTTATTGACAAAGAGCAAGTGCAAGCAATTATAGGTCCACAAACGTGGGAAGAAACAACATTAATAGCTGAACTTTGCAACCAAAACATGACACCTCTTCTATCCCTAGCAGATGTAACTCCAAATTGGGCAACATCAAAATGGCCCTTCATGGTTCAAACTTCACCTAATGCATTAAAACAAATGAAAGCAATATCTGCTATTGTTCAATCATGGGATTGGTACAGTGTCAACATAATTTATGAAGACAAAGATGCTTCATCCACAGAATCTTTATCCAATATCTATTTAGCACTCACTGAAGCAGGTATCACAATAAGTAATCTCTTGAGTGTTCCTCCTTTTCCTTCCTCTTCACTGTCCAAAGATCTTGAGAATCTTAGAGAAGGCCATTGTAGAGTCTTTGTTGTTAGTTTGTCCCTCAATTTGGCCATAAACCTCTTCGAAACTGCGTCAAAAATGGATATGGTTGGGAAGGACTATGTTTGGATCATTACTGACCCTTTTACAAGCCTTGTTCATTCCTTAAATGCTTCAACTATCTCGTCAATGCAAGGAATCATTGGAGTCAAGAGCTATTTCCAAGAAAATAGGAAAAAACATGAGGATTTCTACCGGAAATTTCGTCGAAAATTTAGCCTAGATTACCCGCAAGAACTCAACAATGAGCCAGGAACTTTTGCAGCACATGCTTATGATGCTGCATGGACTCTGGCTCTAGCCATGAGTCAAACCAACAATAATGAAGGTGGCAAATTCCTGATGAACAAGATTTTGCATAGTAATTTTCTTGGCCTAAAGGGAAGAATTCAATTCAATGATCATACCTTAGATCCTACACAGACTTTTCAAATCATCAATGTGATTGGGAAGGGATACAAGGAGATTGGTTTTTGGTCAAATGGACTTGGATTTTCAAGCAATATTGGTCAACATGATGTTAGTTATAGTTCTTCAATGAAGGAACTAGGACAGGTTATGTGGCCAGGTAGACCTTGGGAAACTCCAAGAGGGTGGGCCCTACCAACAATTGAGAAGCCATTAAGAGTTGGGGTCCCTGCTTTGTCCACATTGAAACAATTTATAAACATAACTCATGATCAATTCCAGGGATTCACTATTGATCTTTTCAAAGCAACTATGGACTTGATGCCCTACCATGTTCCATACAAGTTCTATGCTTTCAATGATACTTATGATGAGTTGGTGAGGCAAATTTATTTGAAGAATTTTGATGCAGTAATTGATGTAACAATAATCTCGTACCGGTACCAGTATGCCGAATTCACTCAGCCATACACTGATCCTGGAGTGGTGATGGTAGTCCCTTTGAAATCAAAAACAGGACACAGAGCTTGGCTGTTTGTGAAGCCTTTCACAAAGACAATGTGGATCCTAATAGTGTTAGTGATTATCTACAATGTCTTTGTTTTATGGATGCTAGAAAGAAAGCATTTCTGTGAACTCAAGGGCTCCATACTCAAACAATATGGCAACATTGCTTGGTTGGCAATGACCCCTCTCGTAAACTTAAATGACATAGGAGATAAATTACACAACAATTTATCAAGGGTGGCTATGGTGGTGTGGTTGTTTGTGGCCCTCATTATAATGCAGACATACACAGCCAACTTAACCAGCATGCTAACAGTTGAAAGACTTGAACCAACAATAGGTGATGTTGATCAGTTAAGAAATAACAATGCCATGGTTGGATACAGTACTGGATCTTTCTTGAAAAATTATCTTCATGATGTTCTACACTTTAACCCTGCAAACATAAGGCAATTTAGATCACATGAAGAGTTCGCTGAAGCTCTCAGAAGAAAAGAAATAGCAGCTGTCTTTATTGAAGTTCCTGGGGCCAAGATTTTCCTTGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCGATGTATAAAATCGGAGGATTTGGTTTCGCTTTTCCGCAAGGATCTCCATACCTTCCACTTGTGAACAAAGCACTGTTGGATTTGTTTGAATCCGGAAAACAGAGGGAACTGGAGAACAGAATGCTTGCATCAGAGAAATGTGAAGAGTCTGAACCGGACGGCGAAACTGCGAGTCTTAGCCCAAACAGCTTCTGGGCCTTATTCACTTTGACAGCAGGTACATCAACAATTGCCCTCTTGATTTATGTCACCGGCACCAATGGTTCGAACCATGATCAGAAGACTATCGGGTGGTTAACCTCGGCGGTGATTGAACAATGGGGACAAGCCAAGAGACGACTCTCAAGAAAAGATAGTCATGTTGCAGAAAGTCCTGTGAACTCTCCAGATTCAGATTCACATGTTATGCAACGTCCTCAAGCTTGA 2628 0.4003 MESMHKFVPLVCLISMNMVKIVLGTATKFHEGDASMDVKKGIVGVVADYNDGSGKEEIVAIKMALEDFYHYTNRSFGLHIRDSHGDPLKAALAARDLIDKEQVQAIIGPQTWEETTLIAELCNQNMTPLLSLADVTPNWATSKWPFMVQTSPNALKQMKAISAIVQSWDWYSVNIIYEDKDASSTESLSNIYLALTEAGITISNLLSVPPFPSSSLSKDLENLREGHCRVFVVSLSLNLAINLFETASKMDMVGKDYVWIITDPFTSLVHSLNASTISSMQGIIGVKSYFQENRKKHEDFYRKFRRKFSLDYPQELNNEPGTFAAHAYDAAWTLALAMSQTNNNEGGKFLMNKILHSNFLGLKGRIQFNDHTLDPTQTFQIINVIGKGYKEIGFWSNGLGFSSNIGQHDVSYSSSMKELGQVMWPGRPWETPRGWALPTIEKPLRVGVPALSTLKQFINITHDQFQGFTIDLFKATMDLMPYHVPYKFYAFNDTYDELVRQIYLKNFDAVIDVTIISYRYQYAEFTQPYTDPGVVMVVPLKSKTGHRAWLFVKPFTKTMWILIVLVIIYNVFVLWMLERKHFCELKGSILKQYGNIAWLAMTPLVNLNDIGDKLHNNLSRVAMVVWLFVALIIMQTYTANLTSMLTVERLEPTIGDVDQLRNNNAMVGYSTGSFLKNYLHDVLHFNPANIRQFRSHEEFAEALRRKEIAAVFIEVPGAKIFLAKYCKEFIQAGPMYKIGGFGFAFPQGSPYLPLVNKALLDLFESGKQRELENRMLASEKCEESEPDGETASLSPNSFWALFTLTAGTSTIALLIYVTGTNGSNHDQKTIGWLTSAVIEQWGQAKRRLSRKDSHVAESPVNSPDSDSHVMQRPQA* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1688 875 PIRSF IGluLR_plant 2 874 IPR017103 -
Amo18g1688 875 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 863 - -
Amo18g1688 875 SUPERFAMILY Periplasmic binding protein-like II 421 774 - -
Amo18g1688 875 MobiDBLite consensus disorder prediction 855 875 - -
Amo18g1688 875 SUPERFAMILY Periplasmic binding protein-like I 43 435 IPR028082 -
Amo18g1688 875 Gene3D - 547 682 - -
Amo18g1688 875 SMART GluR_14 443 778 IPR001320 GO:0015276|GO:0016020
Amo18g1688 875 CDD GluR_Plant 442 776 - -
Amo18g1688 875 Pfam Ligand-gated ion channel 775 807 IPR001320 GO:0015276|GO:0016020
Amo18g1688 875 MobiDBLite consensus disorder prediction 848 875 - -
Amo18g1688 875 Pfam Receptor family ligand binding region 60 385 IPR001828 -
Amo18g1688 875 Pfam Bacterial extracellular solute-binding proteins, family 3 462 774 IPR001638 -
Amo18g1688 875 Gene3D - 153 397 - -
Amo18g1688 875 CDD PBP1_GABAb_receptor_plant 43 405 IPR044440 -
Amo18g1688 875 Gene3D - 440 546 - -
Amo18g1688 875 PANTHER GLUTAMATE RECEPTOR 33 863 - -
Amo18g1688 875 Gene3D - 53 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1688 Amo-Chr18 34165901 34170789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1688 32 814 Ion Channels AT5G11180 32.057 5.15e-129 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1688 - - var:108332761 1131.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1688 18 34165901 34170789 Amo18g1688 18 34165901 34170789 ECH