Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1674 ATGGTTGCCGCCGGCGAACCCATGAAGAAGAAACCGAAGCAAAACCTACTGAACCCCAATTGGGTTCAACTCCAACAAAAGCTAAAGCTCAATAATAAGTCTTCAAGGACTTACAAAGAAGAAGACACCCCAAAATCAATACTGGGGAAACGTAAAGAGAGCCCGAATGATGAATCCAATGACTCTCAGATTGATCCTCTTATTCCTGTAAATGACGACTCAAGTCTGACAGATGCAGTCGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCATTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGATGAGTTTGTTCGGCCAGTAGAACGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATTTGAAAAAAGCAATTGACTTTTGGACTGCTCAGAAGAAAGTTGCAGAGTTGATGAAAGGAAGGATCCTTGTTGGTCATGCCTTGCAGAATGATCTTAAGGCGTTGTTATTAAGTCATCCGAAAAAGGACATTCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTCAGGTTGTAGAAGAGCGCTGCGGCATCTTGCTGCAGAAATTCTTGGTGCCAAGATCCAATCAGGAGAGCACTGCCCTATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAGAAAAGAGTGGGAAAGGAGCTTAAGAGATCAGTTTAGGCCAAAAAGAAGCAAAATAAACGGAAGAATAAAAAGAAACCAAAGAATGAAGATACTTCAAATGCCAACCATGCTATAA 807 0.4176 MVAAGEPMKKKPKQNLLNPNWVQLQQKLKLNNKSSRTYKEEDTPKSILGKRKESPNDESNDSQIDPLIPVNDDSSLTDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDLKKAIDFWTAQKKVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFLKSGCRRALRHLAAEILGAKIQSGEHCPIQDARAAMLLYQRNRKEWERSLRDQFRPKRSKINGRIKRNQRMKILQMPTML* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1674 268 MobiDBLite consensus disorder prediction 16 32 - -
Amo18g1674 268 Pfam Exonuclease 80 227 IPR013520 -
Amo18g1674 268 SUPERFAMILY Ribonuclease H-like 79 234 IPR012337 -
Amo18g1674 268 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 32 250 - -
Amo18g1674 268 SMART exoiiiendus 78 236 IPR013520 -
Amo18g1674 268 MobiDBLite consensus disorder prediction 1 69 - -
Amo18g1674 268 MobiDBLite consensus disorder prediction 33 59 - -
Amo18g1674 268 Coils Coil 217 237 - -
Amo18g1674 268 PANTHER RNA EXONUCLEASE 4 32 250 - -
Amo18g1674 268 Gene3D - 75 252 IPR036397 GO:0003676
Amo18g1674 268 CDD REX4_like 80 228 IPR037431 GO:0006364|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1674 Amo-Chr18 33855980 33860407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1674 79 237 C2H2 Transcription Factor Family AT5G40310 36.000 7.75e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1674 K18327 - gmx:100819122 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1674 18 33855980 33860407 Amo18g1674 18 33855980 33860407 ECH
Amo18g1674 18 33855980 33860407 Amo07g2401 07 71078088 71082296 hybridization