Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1655 ATGAATTTCCTCAGGTACTGCCACGTCATCACCACCATCTTCCTTCTATCAGTACCCAACATTACTGCTCAATTGGCGGCTCCGTCAGCTCACCGACCAGTAGTCACCCAAAACAACGACGGAAACCCTTCGATTGCGATTGTTCTCGTCGTTCTCATCTTCGCATTCTTCATGACTGGCTTCTGCGCCGTCTACATTCGCCACTGCAATGAAAGCTACGTCGTTCAGGGAGCTGCCGCTGCCAACGCCGCCACTGCTCCACGTGGTGTCGATCCGGAGGTGCTCTCCACGTTCCCAATTACGGTTTATTCCACCGTGAAGCACCTCAAAACGGGTCACAGTGCGTCGCTTCAGTGCGCTGTGTGCTTGAGCGAGTTCAAGGACATGGACAAGCTCAGACTTTTGCCCAAGTGCAGTCACGTGTTTCACCCCGAGTGCATCGACGCGTGGCTCGCCTCGCACGTGACTTGTCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAACATGGAGTTCAAGGTTGAGATTCAGGAGTTAGAGGGAACTGCCAACCATGTGTTCGATGAAATGTCTGGGAGAATGGGTGAGGTTTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGTTGATGGGGTTGTTGGGAAGTGTAATGGGACCTCAAAAGTGAGAGCTTTTGGGTTGTTGGTGAGGTCGCACTCTACGGGTCACTCTCTTGTGGAACCGGGGAAGAGCTTGGAGAGGTTCACTTTGAGGTTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGCCAATCATAAGTGTAGTGGTGGTAGTGGTGGGATGAAGCGTTCTGCAAGCTACGACGTGGTTTTGCAGAGTGAAGTTGGTGAAGGTAGTAGTAGTAATAAGGGGAGTAAGAATAGCAGGTGGGTGCTGTCTATGACACCTCCGTTTGTTTCTCGCGGTTGGGGTCATTTTAGTACTTCTTCTGGTTTGGCACCGCCGAATGAGTGCTCAACATGCTCTGGGATTCCTAGGCTTTGGGGTTCTTCAGCGGCAAGAGAAGAGAAAGTATGTGAAGGGAGAGAGGGTTTGCAACTGTTTCTTAATCAACCTGATCCATTTGTTGGAACGGGTGGAAGTGGATCAATAACAAAATTGGACTTTCTAGTCCATCAGCACCAAGGACAAGCTGGATGCCATGAGAGAATAACCAATTCCCAATTACTGGCTTTCTCAGCTGTTTATAAACTCACAATACGCCTTGTTACTTCGTAA 1257 0.502 MNFLRYCHVITTIFLLSVPNITAQLAAPSAHRPVVTQNNDGNPSIAIVLVVLIFAFFMTGFCAVYIRHCNESYVVQGAAAANAATAPRGVDPEVLSTFPITVYSTVKHLKTGHSASLQCAVCLSEFKDMDKLRLLPKCSHVFHPECIDAWLASHVTCPVCRAKMKSENMEFKVEIQELEGTANHVFDEMSGRMGEVSCDGNEGGVGEGVDGVVGKCNGTSKVRAFGLLVRSHSTGHSLVEPGKSLERFTLRLPEELRKQILEANHKCSGGSGGMKRSASYDVVLQSEVGEGSSSNKGSKNSRWVLSMTPPFVSRGWGHFSTSSGLAPPNECSTCSGIPRLWGSSAAREEKVCEGREGLQLFLNQPDPFVGTGGSGSITKLDFLVHQHQGQAGCHERITNSQLLAFSAVYKLTIRLVTS* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1655 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 14 280 - -
Amo18g1655 418 SUPERFAMILY RING/U-box 112 165 - -
Amo18g1655 418 Pfam Ring finger domain 118 161 IPR001841 -
Amo18g1655 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Amo18g1655 418 CDD RING-H2_EL5_like 118 161 - -
Amo18g1655 418 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Amo18g1655 418 PANTHER RING FINGER DOMAIN-CONTAINING 14 280 - -
Amo18g1655 418 Coils Coil 161 181 - -
Amo18g1655 418 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1655 Amo-Chr18 33361456 33363121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1655 2 314 Rapid Response to Elicitors AT3G05200 36.070 5.92e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1655 K10664 - gmx:102665105 225.713