Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1641 ATGGACAGCTTCTACCACCACCATAACCACCACTTTGACAACAGCGACACTCACTTGCCACCTGGATTCCGATTCCACCCCACCGATGAAGAACTCATCACCTACTACCTCGTCAAGAAGGTTCTCGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCGAAGATGGGTGAGAAAGAATGGTACTTCTTCAGCTTAAGGGACAGGAAGTACCCAACTGGGTTGCGCACAAATAGAGCGACGGAAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGAGAGATCTACAGCTCCAAGACTTGTGCTCTTGTTGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAGAGCTCCCAAGGGTGAGAAGAGCAACTGGGTGATGCATGAGTATCGGCTTGAAGGCAAATTTGCATACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATTTCTCGTGTGTTCCAGAAGACAACCACCGGGGGTGGTGGTGGAGGTGGAGGTGGAGGCTCAGCCGTGTCAACCACCGCCGGCGGGTCCAAGAAGGCGAAAATGAGCACTTCAACCACCACTTCTACAATGAGCTTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTACCTTCCACCACTTCTCGACTCTTCACCTTACACTACCGCCACCACAGGCTCCGTCACCTCCGCCGCCGCAGCATACGACGGCCGCCAGAGCTCCTCCTTCGACAACAACAACAACGATAGCACAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCAACAACTTTGTCAATGGGTTCTTCGATCTTGCTCCTATGGATTCCTTCGCTCGATTCCAAAGAAACAACAATGTCGGTGTTTCTGCATTCCCAAGTCTAAGGTCGCTGCAAGATAACCTTCAAATTAACCCTTTGTTTTTCTCCGCCGCAGCGGCGCAGCCTCTCCACGGCGGCGAGCTTCACGCCGCGGGGACCTGGCCGGTGCCGGATGATCAGAGGGTTGCCGAGGCTGCTGCCGCCGGCATGGCTTTGGGACATTCCGAGCTTGATTGCATGTGGGGCTATTGA 1107 0.5303 MDSFYHHHNHHFDNSDTHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTTTGGGGGGGGGGSAVSTTAGGSKKAKMSTSTTTSTMSFCPEPSSPSSVYLPPLLDSSPYTTATTGSVTSAAAAYDGRQSSSFDNNNNDSTREHVSCFSTISNNFVNGFFDLAPMDSFARFQRNNNVGVSAFPSLRSLQDNLQINPLFFSAAAAQPLHGGELHAAGTWPVPDDQRVAEAAAAGMALGHSELDCMWGY* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1641 368 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Amo18g1641 368 MobiDBLite consensus disorder prediction 174 200 - -
Amo18g1641 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 364 - -
Amo18g1641 368 ProSiteProfiles NAC domain profile. 19 171 IPR003441 GO:0003677|GO:0006355
Amo18g1641 368 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Amo18g1641 368 SUPERFAMILY NAC domain 10 171 IPR036093 GO:0003677|GO:0006355
Amo18g1641 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 10 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1641 Amo-Chr18 32919555 32921295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1641 1 368 NAC Transcription Factor Family AT5G53950 52.792 1.06e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g1641 NAM 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1641 - - cam:101501114 478.018