Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1639 ATGGAATACATGGCTGGCGGCTCTGTTGCTGATCTACTTCAATCCGGTCCTCCACTGGATGAAACATCCATTGCTTGCATTCTACGTGACTTGCTACATGCAATTGATTACCTACACACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTGACCGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAGCTCACGAGGACCATATCAAGGAGAAAGACATTTGTAGGAACACCTTTCTGGATGGCACCAGAGGTTATTCAGAATTCCGAAGGATATAATGAGAAGGCAGATATCTGGTCTATGGGGATCACTGCAATTGAGATGGCAAAAGGGGAGCCTCCACTTGCCGATCTTCATCCCATGAGAGTGCTTTTTATCATACCTCGAGAGAATCCTCCGCAGTTAGATGAGCATTTTTCTCGTCCCCTGAAAGAGTTCGTTTCATTGTGTTTGAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAACACCGTCTTATTCGGAATGCTAGGAAGAGTCCAAAGCTTGCAGAAAGAATAAGGGAGCGTCCAAAGTACCACATAAAGGATGATCCGGGGGCAGATGATCCGGGGACTGTTAAAAAAGTCCCAAGAGGGATGGGTGAGGCTTCTGATACTATGAAGGTGTCTAGAGATGTTAGAGCTGAAGAAACTAGTAGAACCAGTGGTCAGGGTCAAACTGTAAAAAGTGCTGGATGGGACTTCAACATTGGTGGATCACAAGGCACTGTTCGTAGCGGTACTGTTCGTAGTGTAGCACGACCACCTGTTTCACAAAATCAGGTTACCCAAAGAAAAGCTCCGGAGAGTGGCTATCAAGGGGGAACTGTCAGTAGAAGTGCACTAAACGAGTCGGTTGAAAGTTCACTCGGAAAGGATCTTAGAATTACATATCATGATGAGGATCCGGATGATCATGATGAAGATGATGAAGGGAATGGATCAGGAACTGTCGTTATTCGATCTCCAAAAGCATCAAGGCCATCAGTAGTTCGTGGCCAAAGCTCCCAGTCTAGCAGCAGCTATGCTTCTCTTGAAGATGCTTCTACCAGTGGAACTGTTGTCTTGCGTAACCAGAATGATGATTCTGATTCTTCACAAACACCTAGGTCCCGCAAGGGACTTAACGACAGAAATTCTATTACTTCACTGGAAGATAGTGCTGCAAATCTTGCTGAGGCAAAGGCTGCTATCCTAAGGAAAGCAAATGCTAAAGAGAGAAAATTCAACAATATACAAGAAAGCAAGAGAGACCAAATGGCAGGCAGTTCTGATTCTTCAAGATCACATCATGAATACCATGATCCTCAAAAGGGCATGTCAAGATCACAATATGCCAGTGATGATGAAGAGAGTGCTAAAGTTATGTCGTCCTCTGTGCCATTATCAGTTTTGCTCGCTCCTTCACTAAAAGAGACCATTGCTAATGATCCAGAAGGGGCAATCGTGCGAGCGGTTATCAGTTCTCTCATAAACATGGAGGGCACAAGGCCACGATCCTGCGATGTTCTTGTCAGAAAGTTGCTTCAGCGGTTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGCAGGAACTAGCAGGCCAACTATTCAGCAAGACCAAGGGAACCGGAGACACGCGAAACACCGAAGCCGATAGCCGGAGGAAACAACAGAACAAGGACATCCATCAAAATAGCAATTTGAGCCCACTAGCCAGATTTCTTCTCTCAAGATGGCAGGGTCAAAGCTCACGTGATCTAAACCAATCTTGA 1809 0.45 MEYMAGGSVADLLQSGPPLDETSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSMGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPLKEFVSLCLKKVPAERPSAKELLKHRLIRNARKSPKLAERIRERPKYHIKDDPGADDPGTVKKVPRGMGEASDTMKVSRDVRAEETSRTSGQGQTVKSAGWDFNIGGSQGTVRSGTVRSVARPPVSQNQVTQRKAPESGYQGGTVSRSALNESVESSLGKDLRITYHDEDPDDHDEDDEGNGSGTVVIRSPKASRPSVVRGQSSQSSSSYASLEDASTSGTVVLRNQNDDSDSSQTPRSRKGLNDRNSITSLEDSAANLAEAKAAILRKANAKERKFNNIQESKRDQMAGSSDSSRSHHEYHDPQKGMSRSQYASDDEESAKVMSSSVPLSVLLAPSLKETIANDPEGAIVRAVISSLINMEGTRPRSCDVLVRKLLQRLASSKEDSLKDLQELAGQLFSKTKGTGDTRNTEADSRRKQQNKDIHQNSNLSPLARFLLSRWQGQSSRDLNQS* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1639 602 Coils Coil 524 544 - -
Amo18g1639 602 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 600 - -
Amo18g1639 602 MobiDBLite consensus disorder prediction 184 398 - -
Amo18g1639 602 Gene3D Transferase(Phosphotransferase) domain 1 1 213 - -
Amo18g1639 602 Pfam Protein kinase domain 1 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1639 602 MobiDBLite consensus disorder prediction 346 398 - -
Amo18g1639 602 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1639 602 MobiDBLite consensus disorder prediction 549 576 - -
Amo18g1639 602 SUPERFAMILY Protein kinase-like (PK-like) 1 179 IPR011009 -
Amo18g1639 602 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 600 - -
Amo18g1639 602 MobiDBLite consensus disorder prediction 557 573 - -
Amo18g1639 602 MobiDBLite consensus disorder prediction 237 305 - -
Amo18g1639 602 MobiDBLite consensus disorder prediction 184 209 - -
Amo18g1639 602 MobiDBLite consensus disorder prediction 426 472 - -
Amo18g1639 602 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1639 602 MobiDBLite consensus disorder prediction 439 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1639 Amo-Chr18 32890379 32896989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1639 1 599 MAP Kinase Kinase Kinase Kinase AT3G15220 59.289 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Amo18g1639 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1639 K08838 - gmx:100815042 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1639 18 32890379 32896989 Amo18g1639 18 32890379 32896989 ECH
Amo18g1639 18 32890379 32896989 Amo08g1633 08 26943285 26945278 hybridization