Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1635 ATGGGTAAGAAGAAGAAGAGGGTTGCGTCCAAGGTGTGGTGCTATTACTGCGATCGCGAATTCGACGATGAGAAGATCTTGGTGCAGCATCAGAAGGCCAAGCACTTCAAGTGCCATGTATGCCACAAGAAGCTCTCCACCGCCGGCGGTATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCGAATGCGAAACCTGGTAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTGCTCATTATGGAGAAGAAGACGATGATGTTCCATCAAAGGCAGCAAAGGTGGACATACCATCAACACAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGGATATCCTCCTCGACCAGCGGTACCGCCAATGTATAATCCAGCCGTGCCTGTCCCCCCAAATGCTTGGGCTGTTCCACCTCGACCGGCTCAGCCATGGTATCCCCAACCTCCATCTGTTTCGATTCCACCACCTGCTCCTTACGCACAACAGCCATTATTCCCCGTGCAGAACGTGAGACCGCCACTGCCATCAACTGCTCCTTCTCCACTCCAAACTCAGGTTACTCCTCCTGGGATGCCTTCATCTACACCTTCTGTCCCTGTTTCGCAACCTTTGTTTCCTGTTATTACAACTCAAAGTTCAACATTTTCTCCTGCTCCTCTATCTTCAAGTGCTCCATCCATAAATCCAGTCATATCCTCAAGTGCCCCTGTTGATTCCCATTTGGGTGCCAACTCTGTTGTAAATGCTTATCAGGCAATAGGGATTCCAGGTGGGACAGCGGGTAACTCACATTCCTATGCATCTGGTCCAAATACCGGTGGCCCTTCAATCGGACCTCCCCCGGTAATTGCAAACAAAGCTCCTGCGCCTCAGCCTGCTGCTAATGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTCTGCCAAAATATCAGGTTCATGATGAAACTAGCCAGGTAAGTCATACTACCTCTGTAATAGATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTCCTTTATTCAGATTCAGTTGTTTACACATTATTTCTTCTTTACAGAGTAA 1146 0.4852 MGKKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEDDDVPSKAAKVDIPSTQLVGGMVPPPLGTGYPPRPAVPPMYNPAVPVPPNAWAVPPRPAQPWYPQPPSVSIPPPAPYAQQPLFPVQNVRPPLPSTAPSPLQTQVTPPGMPSSTPSVPVSQPLFPVITTQSSTFSPAPLSSSAPSINPVISSSAPVDSHLGANSVVNAYQAIGIPGGTAGNSHSYASGPNTGGPSIGPPPVIANKAPAPQPAANEVYLVWDDEAMSMEERRMSLPKYQVHDETSQVSHTTSVIDGVAFTSNQMSRLYASFIQIQLFTHYFFFTE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1635 381 MobiDBLite consensus disorder prediction 196 214 - -
Amo18g1635 381 Gene3D Classic Zinc Finger 2 66 - -
Amo18g1635 381 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Amo18g1635 381 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Amo18g1635 381 SMART c2h2final6 12 35 IPR013087 -
Amo18g1635 381 SMART c2h2final6 36 59 IPR013087 -
Amo18g1635 381 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 356 - -
Amo18g1635 381 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Amo18g1635 381 MobiDBLite consensus disorder prediction 188 214 - -
Amo18g1635 381 PANTHER ZINC FINGER PROTEIN 207 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1635 Amo-Chr18 32595872 32599279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1635 1 364 C2H2 Transcription Factor Family AT1G30970 63.307 1.76e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g1635 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1635 - - gsj:114421245 548.125