Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1630 TGGTTGTGGTCCACACTGCTTCCACCTTCCTTGTCTACCTTTTTGCCCCCTATAAACCCCCCTACACTCCTCTTCTTCCACTCCCATTTCTTCCCAAAGAGGAGGTTCAAAAAGGCTATTTTCTTCTTCCTCTTCATTGTTGTCATTGTCACAATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGTTGGTGATGGTGTCCTTGCAGAAGAAGAGAAGAAGAAAAGTGCTGTTGGAAGTGGGAGAAGAGGATCAAATGGGGCAGGAGGAGTTTCTCCACCRTCCTGCCAGGCTGAGAGGTGTGGCGCCGACTTGACCGAGGCAAAAAGYTACCACCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAACGAGAGACGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGAGGCGGCAAAGGGCAACCCCCTAAGGAAAGCCACTGCAGAAACACCGACGATCGGGGAAGAACTCAGATGAACATTTCAGGGAGCTCTGGCTACAAGTCCTTCCATATCAGATGA 723 0.5145 WLWSTLLPPSLSTFLPPINPPTLLFFHSHFFPKRRFKKAIFFFLFIVVIVTMEARMRRTTVEKMRKDSTVDEVEEELEEEDESGVGDGVLAEEEKKKSAVGSGRRGSNGAGGVSPPSCQAERCGADLTEAKSYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPPKESHCRNTDDRGRTQMNISGSSGYKSFHIR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1630 240 Coils Coil 63 83 - -
Amo18g1630 240 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 240 IPR044817 GO:0003677
Amo18g1630 240 MobiDBLite consensus disorder prediction 66 119 - -
Amo18g1630 240 ProSiteProfiles Zinc finger SBP-type profile. 115 192 IPR004333 GO:0003677
Amo18g1630 240 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 53 240 - -
Amo18g1630 240 MobiDBLite consensus disorder prediction 72 87 - -
Amo18g1630 240 Gene3D - 109 179 IPR036893 GO:0003677|GO:0005634
Amo18g1630 240 SUPERFAMILY SBT domain 116 195 IPR036893 GO:0003677|GO:0005634
Amo18g1630 240 MobiDBLite consensus disorder prediction 183 240 - -
Amo18g1630 240 Pfam SBP domain 118 191 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1630 Amo-Chr18 32441406 32442710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1630 103 205 SBP-box Gene Family AT1G53160 70.192 3.35e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo18g1630 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1630 - - gmx:100815775 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0979 18 15840992 15842253 Amo18g1630 18 32441406 32442710 ECH
Amo18g1630 18 32441406 32442710 Amo20g0373 20 4736316 4737421 ECH
Amo18g1630 18 32441406 32442710 Amo18g1630 18 32441406 32442710 ECH
Amo18g1630 18 32441406 32442710 Amo08g1629 08 26835117 26835953 hybridization