Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1602 ATGTGTTGTTGTTCTTGGTGTACATGCATCTCTAACTGGATAAAGATGGAAGGTTCTTCAGGTTCTGGCTGGCAGAAATCTGATAGCTCGAGGACGTTGAATAGTTCCGGAGTCTCTGATAGGAACCAAAGGCATCGTTGTCCTGAAAGAAATCGCTTATCTGGTGAGGCTTCACACGATTCGAGCTCAAAGAAGGAAAGGGACAGGGTTCTTTTGGCACAAGGTGATCACAATAAGAATCTGGGTGGGTTTTCTGGGTTTTGTGATGACGAAGTAGGGGCGGACCCTTTTGTTTGCTCTATAGAATGGGGTGATATTAGCCTGAGGCAATGGTTAGATAAACCGGATCGATCCGTAGATGTCTTTGAATGTTTGCACATATTTAGGCAAATAGTAGAAATTGTTAACTTAGCACATTCTCAAGGAGTTGTAGTTCATAATGTCAGGCCTTCCTGCTTTGTCATGTCGTCTTTCAACCACATCTCATTTATTGAATCTGCATCTTGTTCGGATTCTGGATCAGATTCTTTAGGAGATGGATTGAATGGCCAAGGTGTTGAGGTTAAAACTCCAATGTCTCTCTGCCCCCACGACATGCATCATCGGAGTTTAGGAAGTGAAGATTTTGTGCCTGTCAAACCCTCAACAACTGCTTTGTCAGATTCTAGTTGCATGCTGTCGAGTGCAGTGTATGCAGCTCGTGCGTCGTTAATAGAAGAAACAGAAGAAAATAAAATGAAGGATAGGAGAAAGGCCGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAACAGATACTATTGATGGAGATGAGTTGGTATACTAGTCCCGAAGAGGCTTCGGGCAGTCCTAGTTCCTGTGCTTCAGATGTTTACCGCTTGGGGGTTCTCCTTTTTGAGCTATTCTGTCCACTGAGCTCAAGAGAAGAGAAGAGTAGAACCATGTCTAGCCTTCGACACAGAGTTCTTCCTCCGCAGTTACTTCTAAAGTGGCCTAAAGAAGCCTCCTTTTGCTTATTGTTACTACATCCCGAGCCTAGTAGTCGTCCAACATTGGGGGATTTGCTGCAGAGCGATTTCCTCAATGAACAGAGAGATGACATGGAAGAACGGGAAGCAGCAATAGAACTTCGACACAGAATAGAGGATCAGGACTTGTTACTAGAATTCCTTTTGTTAATTCAACAAAGAAAACGGGAAGTAGCTGAGAAGTTGCAACACACTATCTCATTTCTGTGTTCGGATATTGAAGAAGTTGCCAAGAAGCAAGGCAGACTTAAAGAGATTACCGGAGCCGAACTAAGGTGTGATGATCATTCGACATCAAGTTTCCCATCCATGACTGTTGTTGATAGTGAGGATTCTGCTTGCACGGGGACCAGAAAACGATTTAGACCAGGGATGCATGTTAGAAACATGGAGGAATATGATGATAACATAGTTGATGATCAGAAAAATCAGGGAAGTTATCTTTCGAAAAGCTCACGGCTGATGAGGAACTTTAAGAAACTAGAATCGGCATACTTCTTAACACGTTGCCGACCATCGTTGGCGAGACCAGTGGCTAGACATTTGCCTTTAGCAAACGACGGTAGAGGTTCTGTAGTTGTGTCTGAAAGAAGTTGTGTCAACAACTTAGCATCAAAAGAGCAATGCAGGGAGGGTTCGAGTGCTTGGATAAATCCTTTCCTTGAAGGTTTATGCAAGTACTTATCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTTAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCACTCAGCTTTGATCGTGACGGAGAATTTTTCGCTACTGCTGGCGTGAATAAGAAGATCAAAGTGTTTGAATGTGATGCAATCATAAATGAGGATCGTGATATCCACTATCCGGTGGTGGAGATGGCTAGTAGGTCAAAGTTGAGCAGCATATCTTGGAATACCTACATCAAAAGTCAAATTGCTTCGAGTAACTTCGAAGGGGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTACTGTCCGAAATGCGGGAGCATGAGCGGCGGGTGTGGTCGATCGATTTCTCATCAGCAGATCCGACAATGTTGGCAAGTGGGAGCGATGACGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTATCGGTACCATCAAGACGAAGGCGAATGTGTGCTGCGTTCAGTTCCCTCTCGATTCAGCCCGCTTCCTCGCATTTGGTTCGGCAGATCACCGGATATACTACTATGATCTTCGCAACTTGAAAGTGCCACTTTGTACATTGATTGGACATAGTAAGACTGTGAGCTACATCAAGTTTGTAGACAATGTGACTCTTGCCTCTGCATCCACGGATAACACACTTAAGCTTTGGGATTTGTCTACATGCGCGTCTCGAGTCATCGACTCGCCTGTTCAATCATTCACCGGTCATATGAATGTTAAGAACTTTGTGGGGTTATCAGTTTCCGACGGTTATATAGCCACCGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCCTTTCCCATGCCGGCGTTATCATTCAAGTTTCAGAACACCGACCCCCTTTCCGGCCATGAAGTCGAAGATGCCACACAGTTTGTCTCTTCGGTATGTTGGCGCGGCCAGTCCTCCACCTTGCTTGCGGCGAATTCGACTGGGAATGTCAAGATTCTGGAGATGGTTTGA 2709 0.4444 MCCCSWCTCISNWIKMEGSSGSGWQKSDSSRTLNSSGVSDRNQRHRCPERNRLSGEASHDSSSKKERDRVLLAQGDHNKNLGGFSGFCDDEVGADPFVCSIEWGDISLRQWLDKPDRSVDVFECLHIFRQIVEIVNLAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDSGSDSLGDGLNGQGVEVKTPMSLCPHDMHHRSLGSEDFVPVKPSTTALSDSSCMLSSAVYAARASLIEETEENKMKDRRKAEEVEGKKQSFPMKQILLMEMSWYTSPEEASGSPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLLLLHPEPSSRPTLGDLLQSDFLNEQRDDMEEREAAIELRHRIEDQDLLLEFLLLIQQRKREVAEKLQHTISFLCSDIEEVAKKQGRLKEITGAELRCDDHSTSSFPSMTVVDSEDSACTGTRKRFRPGMHVRNMEEYDDNIVDDQKNQGSYLSKSSRLMRNFKKLESAYFLTRCRPSLARPVARHLPLANDGRGSVVVSERSCVNNLASKEQCREGSSAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDAIINEDRDIHYPVVEMASRSKLSSISWNTYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSIGTIKTKANVCCVQFPLDSARFLAFGSADHRIYYYDLRNLKVPLCTLIGHSKTVSYIKFVDNVTLASASTDNTLKLWDLSTCASRVIDSPVQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVEDATQFVSSVCWRGQSSTLLAANSTGNVKILEMV* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1602 902 Coils Coil 238 258 - -
Amo18g1602 902 SMART WD40_4 759 797 IPR001680 GO:0005515
Amo18g1602 902 SMART WD40_4 806 845 IPR001680 GO:0005515
Amo18g1602 902 SMART WD40_4 716 755 IPR001680 GO:0005515
Amo18g1602 902 SMART WD40_4 856 900 IPR001680 GO:0005515
Amo18g1602 902 SMART WD40_4 585 620 IPR001680 GO:0005515
Amo18g1602 902 SMART WD40_4 631 670 IPR001680 GO:0005515
Amo18g1602 902 SMART WD40_4 673 713 IPR001680 GO:0005515
Amo18g1602 902 MobiDBLite consensus disorder prediction 18 41 - -
Amo18g1602 902 Gene3D - 566 902 IPR015943 GO:0005515
Amo18g1602 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 800 IPR001680 GO:0005515
Amo18g1602 902 MobiDBLite consensus disorder prediction 18 68 - -
Amo18g1602 902 PRINTS G protein beta WD-40 repeat signature 657 671 IPR020472 -
Amo18g1602 902 PRINTS G protein beta WD-40 repeat signature 700 714 IPR020472 -
Amo18g1602 902 PRINTS G protein beta WD-40 repeat signature 784 798 IPR020472 -
Amo18g1602 902 Pfam WD domain, G-beta repeat 762 797 IPR001680 GO:0005515
Amo18g1602 902 Pfam WD domain, G-beta repeat 590 619 IPR001680 GO:0005515
Amo18g1602 902 Pfam WD domain, G-beta repeat 676 713 IPR001680 GO:0005515
Amo18g1602 902 MobiDBLite consensus disorder prediction 42 68 - -
Amo18g1602 902 ProSiteProfiles Protein kinase domain profile. 1 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1602 902 SUPERFAMILY WD40 repeat-like 590 899 IPR036322 GO:0005515
Amo18g1602 902 Gene3D Transferase(Phosphotransferase) domain 1 105 374 - -
Amo18g1602 902 ProSitePatterns Trp-Asp (WD) repeats signature. 784 798 IPR019775 -
Amo18g1602 902 SMART serkin_6 13 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1602 902 PANTHER PROTEIN SPA1-RELATED 3 16 902 - -
Amo18g1602 902 PANTHER PROTEIN SPA1-RELATED 2 16 902 IPR044630 GO:0009640
Amo18g1602 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 680 717 - -
Amo18g1602 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 766 800 - -
Amo18g1602 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 680 722 IPR001680 GO:0005515
Amo18g1602 902 SUPERFAMILY Protein kinase-like (PK-like) 73 366 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1602 Amo-Chr18 31445684 31451143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1602 670 844 Miscellaneous Gene Families AT5G08390 25.424 5.36e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Amo18g1602 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1602 - - gmx:100811457 1536.55