Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1565 ATGGCTGAGTTCACAGAACTATTCCCAATGGGAAAACAGCTAGATGAATTGAAGTATGTGTATCAATACATCTTCACAATTAATTTTCAAAGTATATTGGTTGTTTGTGTCATAGTCACATTGTTCTTCTTCATATTCTACCAAATATTCCATGGCATGTTCTTTTGGTTCTTGGAACTACGGTTGAATAACGAGTTGCTTGATCTCGAAGGAGCAAATTATCTAACGTCCGGAGCTGCACCCAGTAATAACCATGTTACCCTCTTCGAAGTTCTCATCCATACCAATAGTTGGAATATGGCAGATATCTTAGAGGAAGGTGATTTCGACAAGGATAGAGGACCAAAGCTTAGAGCGTTGATGAAATTGCCCCCATTGGTGAGATATGGAATGCATGGTACAACAAAAAATAATGACTGTCCCATTTGCTTGGAAGATTTTAATGCTGGCCAATTTTGCCAAATATTTCCATCTTGCAAACACATGTATCATTCAAATTGTATAGATAGTTGGTTGAAGAAGAAGCTAACATGCCCAGTTTGTCGTAGTTGTATTCAATTACGAAAGGACCTAATAAGGAACGAACTTTGCTATGGCCTATATATGTGA 609 0.376 MAEFTELFPMGKQLDELKYVYQYIFTINFQSILVVCVIVTLFFFIFYQIFHGMFFWFLELRLNNELLDLEGANYLTSGAAPSNNHVTLFEVLIHTNSWNMADILEEGDFDKDRGPKLRALMKLPPLVRYGMHGTTKNNDCPICLEDFNAGQFCQIFPSCKHMYHSNCIDSWLKKKLTCPVCRSCIQLRKDLIRNELCYGLYM* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1565 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Amo18g1565 202 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Amo18g1565 202 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 25 185 - -
Amo18g1565 202 Pfam Ring finger domain 138 182 IPR001841 -
Amo18g1565 202 SMART ring_2 140 181 IPR001841 -
Amo18g1565 202 CDD RING-H2_PA-TM-RING 139 182 - -
Amo18g1565 202 PANTHER - 25 185 - -
Amo18g1565 202 SUPERFAMILY RING/U-box 139 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1565 Amo-Chr18 30636392 30637153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1565 32 182 C3H Transcription Factor Family AT1G53010 31.646 7.08e-18 75.9