Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1558 ATGGGTCCAAATACACTGCTTCTTGGAATAAATGCATGCCTAATTGTTACGTTGTCCTCAAATACCTCAACATTATTTCTTGTATTTCATTTATATTATCAACACCAAACAACATTTTCTGACTCTTTTTATTTACAGATACAGCTATTAAATAATAGTATAGGAAACGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGCTGTAACCCGATGTGGATGTTTGGCGGAGATGAGGATAAAGAGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGAGAGATTGGGATTAGCATACCTAAGATTTATGAGTCCTTCGCAGCACAACTAGGGGGTTTTAACCTGGTAACATTCACAAAGCAAGATATGTATAATGAGATACGGAAACAGAGAGTACGGACAACCTCTAGGTGCGAGTCACTACACGCCAAACTAGGGAGGTTTGTTGAGAGCAGGTACGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGATTTTCTGCGTGACACCGAGGATGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTCGTTGAGCTGGAAAAGTCTGGATGGACTATGTTCACCCGCGAAATGTTTCTCAGATACCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGTGAATTTGATGACAGTGACAACCCTCATGCATATACTCTTCAGAAGTATCGGAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTACTTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTTTGTGTAAGGCTAGACTTGGTGGAAATCCCTGAAAGCCTGGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGGTGAGCAACACACTGCTGAACCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGCGATGAAGACTTCAAGCTTTACTCAAACAAGCTTATGAGCGATGCTCTGTTCCTTGAAATAAAGTACGGCTTAAGACCATTAACGGATAATATGACAACAGCAAATGATTGCGGGGTGAAGGACCCCATTCGTGTCAGGACAAAAGGCACGGCTCGGATGAGTCAAGCAGGCGGTTCTGCGCCGAAAACGAAAAGAAAGTGCAGCACATGCGGGAAGCTCGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCAACGAGGAACAAAGAATCACTTGCTGGGAGAAATAAACGCAAGCGAACGAAGGTTACCACCTAA 1587 0.4537 MGPNTLLLGINACLIVTLSSNTSTLFLVFHLYYQHQTTFSDSFYLQIQLLNNSIGNGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKAVTRCGCLAEMRIKRKEGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMYNEIRKQRVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRYRDSLKRCVRVRICEFDDSDNPHAYTLQKYRRPEMNWKVYRDHISNRFTCSCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKLEIHNQCGEQHTAEPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSNKLMSDALFLEIKYGLRPLTDNMTTANDCGVKDPIRVRTKGTARMSQAGGSAPKTKRKCSTCGKLGHRRTRCPNGGAQPSTRNKESLAGRNKRKRTKVTT* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1558 528 ProSiteProfiles Zinc finger CCHC-type profile. 485 502 IPR001878 GO:0003676|GO:0008270
Amo18g1558 528 SMART 26again6 337 364 IPR006564 GO:0008270
Amo18g1558 528 MobiDBLite consensus disorder prediction 468 528 - -
Amo18g1558 528 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 214 383 IPR031052 GO:0006355
Amo18g1558 528 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 164 IPR031052 GO:0006355
Amo18g1558 528 SUPERFAMILY Retrovirus zinc finger-like domains 466 504 IPR036875 GO:0003676|GO:0008270
Amo18g1558 528 ProSiteProfiles Zinc finger SWIM-type profile. 329 362 IPR007527 GO:0008270
Amo18g1558 528 Pfam FAR1 DNA-binding domain 58 147 IPR004330 -
Amo18g1558 528 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 214 383 - -
Amo18g1558 528 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 56 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1558 Amo-Chr18 30469730 30474596 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1558 FAR1 1.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1558 - - adu:107487706 636.721