Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1504 ATGGAGGTTCAGTCTCTGCGATGCTTCATCTCCCTCTGCGTTCTGCTCGCGCTGCTTTTAATTGGCGCCAATGCAAGCAACTACAACGAGAAACAGATCACAGAATCAAGCAATGTAGGAGAAGCGAATTCGCAGAGCTTGGAGAATTCGCCAATGGCGAAAAGGTCAGGTAATGATGATTCATCAAATTTGCATGCAGTTGATAATCCAGAGGAGATAGCTTCTATGGTTGATATGAGCATCCGCAATCACACGGTAAGAAGGAATCTGAACTTCTTCTCATGTGGGACCGGGAACCCAATAGACGACTGCTGGCGCTGCGACCGCAGCTGGTACCTCCGACGCAAGCGCCTCGCCACCTGCGCCATTGGCTTCGGCCGCAACGCTATCGGAGGCCGCGACGGCCATTACTATGTCGTCACGGACCCATCCGACGACGACGCCGTGAACCCGAAGCCCGGCACCCTCCGCTATGCCGTGATCCAAGACAGGCCTCTCTGGATCGTGTTCAAGCGAGACATGATCATCACACTCAAGCAAGAGCTCATCATGAACAGCTTCAAGACAATTGACGGCCGCGGCTTCAACGTCCATATCGCCCACGGTGCCTGCATCACCGTCCAGTTCGTCACCAACATTATCATCCACGGCATCCACATCCACGACTGCATCCAAACCGGTAACGCCATGGTTCGCAGCTCTCCTTCGCATTACGGCTGGAGAACCCTCGCTGACGGTGACGGCATCTCTATCTTCGGCGCCAGCCATATCTGGATTGACCATAACTCCCTGTCTAATTGCTCTGATGGGCTTATTGATGCCATTATGGGATCTACTGCCATTACAATTTCTAACAACTACTTCACTCACCACAATGAGGTTATGTTACTGGGCCATAGTGATTCTTATGTAAGAGACAAGCAGATGCAAGTCACCATTGCTTATAACCATTTTGGGGAGGGTCTAGTCCAAAGGATGCCAAGGTGTAGACATGGATATTTTCACGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCCGATCCCACAATTAACAGCCAAGGCAATAGATACCTTGCCCCTCTGGATCATTTTGCTAAGGAGGTGACAAAGAGAGTATTAACAACAGAATCCACATGGAAAAAATGGAATTGGAGGTCTGATGGAGACCTTATGTTGAATGGTGCCTATTTCACTTCATCAGGAGCAGGAAATGCAGCTAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCTTCTTCTTTGGTTGGAACTCTTACCTCTGCTGCTGGTGTTCTTAACTGCCGCAGGGGTTTCATGTGTTAA 1344 0.4963 MEVQSLRCFISLCVLLALLLIGANASNYNEKQITESSNVGEANSQSLENSPMAKRSGNDDSSNLHAVDNPEEIASMVDMSIRNHTVRRNLNFFSCGTGNPIDDCWRCDRSWYLRRKRLATCAIGFGRNAIGGRDGHYYVVTDPSDDDAVNPKPGTLRYAVIQDRPLWIVFKRDMIITLKQELIMNSFKTIDGRGFNVHIAHGACITVQFVTNIIIHGIHIHDCIQTGNAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSLSNCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPLDHFAKEVTKRVLTTESTWKKWNWRSDGDLMLNGAYFTSSGAGNAASYARASSLGAKSSSLVGTLTSAAGVLNCRRGFMC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Amo18g1504 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Amo18g1504 447 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
Amo18g1504 447 MobiDBLite consensus disorder prediction 34 66 - -
Amo18g1504 447 Pfam Pectate lyase 183 362 IPR002022 -
Amo18g1504 447 PANTHER PECTATE LYASE 15 444 - -
Amo18g1504 447 SMART amb_all 173 370 IPR002022 -
Amo18g1504 447 Gene3D - 98 440 IPR012334 -
Amo18g1504 447 PANTHER PECTATE LYASE 18-RELATED 15 444 IPR045032 GO:0030570
Amo18g1504 447 MobiDBLite consensus disorder prediction 34 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1504 Amo-Chr18 29384396 29390732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1504 28 447 Polysaccharide Lyase AT4G13710 73.474 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1504 K01728 - gmx:100809277 754.207