Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1486 ATGGATCATTCAACCTCAGATTGTCAGCTGAATCCAGGCGAAGTGGATTATGATTTTGAATCTAACGAAGTTCCTAAGCCTGTGTATTTACAGTTTATGGCTTTAAAGCCTCTCTCGGTTGTTGATGACGAGCTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAAGAACTACGCCAAGGCTGCAGGTTTCTCTACAAGAGTTCGGTGCACAAAGAGGAAGGGAAACGAGATTAAGAATCAACTGATTACATGTAGTAGAGAGGGAAAATGGAAATCTAAAATATCTCTGATCGAGAAGACCAATCCGACAGCAGGTTTAAACTGTCCAGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCATCTGTATGAACACCGTCACATATGGGTTCCTATCGATCTGGATCACCACTTCTGGGCAGGGATAATAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTATATCACCCGGAACAGCTTGCTTATTCAGTTCGTCAAACAATATGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACTGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGCGTACACTCATGCAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAAAGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTCGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGTCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGCCGTCACGCACTAAGCGTGTTAAGCTTCGAACAAGTAAGCCAAGTGTCCCCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTCGACCAATTAGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCCGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGCTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAGACGAAAGTTTTAAGCAAGATAAACCTGTTTGATGCTGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACACGTTATGAATTATTAG 1503 0.4371 MDHSTSDCQLNPGEVDYDFESNEVPKPVYLQFMALKPLSVVDDELVPKVGMTFTTLEDAGKFYKNYAKAAGFSTRVRCTKRKGNEIKNQLITCSREGKWKSKISLIEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRHLYEHRHIWVPIDLDHHFWAGIISTQRSESMHSFFNKYITRNSLLIQFVKQYDNCLGSREQAERESDAADFHTVILCATKSSIEAQFQDAYTHAKFREVQAQFRGKANCITRLKNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNICEFASESEELTAILHRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSKINLFDAASVVHSNSSQYQGHVMNY* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1486 500 PANTHER OS03G0843700 PROTEIN 163 409 - -
Amo18g1486 500 ProSiteProfiles Zinc finger SWIM-type profile. 301 337 IPR007527 GO:0008270
Amo18g1486 500 SMART 26again6 312 339 IPR006564 GO:0008270
Amo18g1486 500 MobiDBLite consensus disorder prediction 427 441 - -
Amo18g1486 500 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 154 IPR031052 GO:0006355
Amo18g1486 500 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 163 409 IPR031052 GO:0006355
Amo18g1486 500 Pfam SWIM zinc finger 303 334 IPR007527 GO:0008270
Amo18g1486 500 Pfam FAR1 DNA-binding domain 61 146 IPR004330 -
Amo18g1486 500 PANTHER OS03G0843700 PROTEIN 39 154 - -
Amo18g1486 500 MobiDBLite consensus disorder prediction 419 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1486 Amo-Chr18 28560844 28563856 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1486 FAR1 1.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1486 - - adu:110280503 621.313