Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1475 ATGGAGAGCACCGACTCATCCACCGGTTCGCAACAACCGAACCTTCCACCGGGGTTCCGGTTCCACCCCACCGACGAGGAGCTCGTTGTTCACTACCTCAAGAAGAAAGCTGCATCAGCTCCTCTCCCAGTCGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCAGCTAAGGCAACGTTTGGGGAGCAAGAGTGGTACTTCTTTAGCCCAAGGGACAGGAAGTATCCGAACGGTGCTCGGCCAAACAGGGCGGCAACTTCCGGGTACTGGAAGGCAACCGGGACGGATAAGCCGGTGCTGACCTCCGGTGGGACCCAGAAGGTSGGYGTGAAGAAGGCTTTGGTCTTCTATGGAGGGAAGCCMCCKAGAGGGATAAAGACAAATTGGATCATGCATGAGTATAGACTTGCTGATAACAAACCTAACAATAGGCCTCCTGGTTGTGACTTGGGTAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTATTGTGCCGAATCTACAAGAAGAACAACACACATAGGTCTCCAATGGAACATGAGAGGGAAGATTCTATGGATGACATGATTGGAGGGATTCCTCCTTCCATCAACGTGGGGCAAATGAATGCAAGATTTCATCTCTCAAAAATGTCAACAAGCTTTAGCAACGGTTTGTTGGAAAACGACCATCACCATCACCAGAATCTTCTGGAAGGTATGATGCTAGGAGGAGGAAACAACAACAACAACAATGTTGTTCCTCCAAACATGTTGGGGTTGGGATCAGCCTCAAACACCATTAACAATAATAGTAATAAGGCAGAGCTTTCATTTGTACCAACCATGACTACATCTTCAAACACCAAGAGGTCTATCATCTCTCTATTGGAATGA 894 0.4799 MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKNNTHRSPMEHEREDSMDDMIGGIPPSINVGQMNARFHLSKMSTSFSNGLLENDHHHHQNLLEGMMLGGGNNNNNNVVPPNMLGLGSASNTINNNSNKAELSFVPTMTTSSNTKRSIISLLE* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1475 297 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 295 - -
Amo18g1475 297 SUPERFAMILY NAC domain 7 177 IPR036093 GO:0003677|GO:0006355
Amo18g1475 297 MobiDBLite consensus disorder prediction 1 20 - -
Amo18g1475 297 PANTHER NAC TRANSCRIPTION FACTOR 56 1 295 - -
Amo18g1475 297 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Amo18g1475 297 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Amo18g1475 297 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Amo18g1475 297 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1475 Amo-Chr18 28181464 28183452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1475 1 245 NAC Transcription Factor Family AT3G15510 68.526 3.18e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g1475 NAM 7.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1475 - - gmx:100170710 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1475 18 28181464 28183452 Amo18g1475 18 28181464 28183452 ECH
Amo18g1475 18 28181464 28183452 Amo08g1540 08 25261314 25263269 hybridization