Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1474 ATGGAGATAATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAGCTAAGAAATCACTCCTTAATAGGTTTAGAGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTGTTGTTGTGTCAAATCATGGTAGTTATAGAACAACTTCTCATGAATTCAAATTGGTTTTCTTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATTACCCAAGATTATGATTTTTTAGTTGATGTCATTGGTCTTTTAACTTCAGTGGGAGAAAAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAATTTCAAAAGATCTTACAGTGCAATGTGCATTGTTTGGAGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTAGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATACCACTCAAATGTTATTTAATCCTGATCTTCTTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGTTGTCAATGGTACTCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGTTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAAGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACACTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTTATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTATATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTCAAGGAGCCTGATTTACACAAATCTGTTCCTGTGGAAAAGGATTTTCTGGCTGAAAAACAGCCTACTGTTTCCAGAGGGACTGAGTTTACTGCCTTAATTAATGGTGAAGATGGAAAAGACGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGTACTGGATATATTACTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTCTCGATGTACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGCACCTCGAAGGGCAAGAGGAATTTGA 1383 0.3709 MEIILLDEHCGKIQATAKKSLLNRFRDHIVEGQVYRMAYFVVVSNHGSYRTTSHEFKLVFFHRTTVVAVDEDVIPKTCFNMFPFSELLNITQDYDFLVDVIGLLTSVGEKKEYAKEGKIVKMIVLELISKDLTVQCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYTTQMLFNPDLLEVVEFRQSMIEQVVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEEFQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITLEDHSGEGIFLLFYREASYLLKKSCADLFTEVQRDASLICGDTYPPIFQGLIGKKLLLKEPDLHKSVPVEKDFLAEKQPTVSRGTEFTALINGEDGKDEKTPSNDTVSDDLSAVLDILLSSPEKETQEVLSHVLDVPSQYGEKLIHENHVAPRRARGI* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1474 460 SUPERFAMILY Nucleic acid-binding proteins 234 360 IPR012340 -
Amo18g1474 460 CDD RPA1_DBD_A_like 1 66 - -
Amo18g1474 460 SUPERFAMILY Nucleic acid-binding proteins 79 200 IPR012340 -
Amo18g1474 460 CDD RPA1_DBD_B_like 99 202 - -
Amo18g1474 460 CDD RPA1_DBD_C 248 361 IPR013955 -
Amo18g1474 460 Pfam Replication factor-A C terminal domain 250 333 IPR013955 -
Amo18g1474 460 Pfam Domain of unknown function DUF223 2 91 IPR003871 -
Amo18g1474 460 Gene3D - 224 362 IPR012340 -
Amo18g1474 460 Gene3D - 1 71 IPR012340 -
Amo18g1474 460 Gene3D - 73 208 IPR012340 -
Amo18g1474 460 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 1 331 - -
Amo18g1474 460 PANTHER REPLICATION FACTOR A 1, RFA1 1 331 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g1474 460 SUPERFAMILY Nucleic acid-binding proteins 2 71 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1474 Amo-Chr18 28150150 28152825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1474 5 330 Core DNA Replication Machinery Family AT5G08020 23.410 1.91e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1474 - - adu:107471135 764.222