Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1464 AATATATATGTATATACTAATGATATTTTATCAACTTATGGAAAAGATGGAGCCCTTTTATTTTTTTTGGGAAAAATAACACTATTTTCACCAAATAGTGTGCTAGAATATAAAGTCCCCGTTTACAAGGCTGTTAAAAATGTCAGGAGAGTTTGTGATAACCTTCCTAGGACATATCATGTTGGATTCAGTCATGGTTTCAACTGTGGAGAAGATATAAACTTTGCAATTAGTGATTGGTTTCTTTTAAGAGCTATTGCTAGTCGGATATTGCACTGCTTAATAGGATTCATTTGCTTTCCCATGAAAAATTTCTATGCAAAAAAGTAA 330 0.3152 NIYVYTNDILSTYGKDGALLFFLGKITLFSPNSVLEYKVPVYKAVKNVRRVCDNLPRTYHVGFSHGFNCGEDINFAISDWFLLRAIASRILHCLIGFICFPMKNFYAKK* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1464 109 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 4 91 - -
Amo18g1464 109 Pfam JmjC domain, hydroxylase 25 75 IPR003347 -
Amo18g1464 109 Gene3D Cupin 9 109 - -
Amo18g1464 109 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1464 Amo-Chr18 27881184 27881631 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1464 11 81 C2H2 Transcription Factor Family AT5G04240 40.000 1.41e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo18g1464 JmjC 2.7e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1464 - - vra:106765852 117.087