Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1449 ATGAACGAGAAGGCCAACGTAACCAAGGAGCTCAACGCCAAGCATAAGAAGATACTGGAAGGGCTTCTTAAATTACCAGAGAATAGGGAATGTGCCGACTGCAAAGCTAAGGGTCCAAGATGGGCTAGCGTAAATCTTGGCATCTTCATATGCATGCAGTGCTCAGGAATACATCGAAGTTTGGGAGTACATATATCAAAGGTTCGTTCTGCAACTTTAGACACATGGCTCCCCGAGCAAGTTGCATTCATTCAGTCCATGGGGAACGAGAGAGCAAATAGCTACTGGGAAGCAGAATTACCTCCAAACTATGATAGAGTTGGAATCGAGAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGGTTGCAAGGGATGGGAAACCAAAATCACCTTCTAGACTGCGAGAAGAGAAAAGTTCTTCACATTGGCAGAGACCTGTGGAAAGAAGTGGGCATGGTTATGCAGCAGCTTCTGAGAATACCGTTGAGGAAAGGAAGAAAACCCAACCTTCAAATCCAAATCCGGCTGCAAGGATTAGTATTCTTACTCCTCCCAAAGCATCTGAACATGTTGCTCCTGTTAGCAAACCTCAGCATGTTGAGAAAGCAGAACCAGTAGCACCTCAACCACAAGTTGAAACTTCAAAGCAGGTTACAGACACAGCTCAAAATATTCCTGCAAAAGTTGATTATGCTACAGATCTTTTCAACCTGTTATCAATGGATGGCCCTAGTGAAAATGGCTCAGAGGCAACTGGTACTACTACTGAAGATAATAACTGGGCAGGTTTCCAATCTGCTCCAGTGGCTTCAACAACTGAGAAGGCTAGTCCTCCAAAAGCAGTTGAGAGTACTCCTCAATCTGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTCAGTGACACCAAGCTTAGCTGCAGAAAAACCCCAGAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGAGCAATATGGTCTCTCCATTCTCTATGCATCAACAGCAGCTTGCCATGTTAGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCAAATGTTGGGGATCCCAAGTACCCTGCTGGTATACAGCAACCTAGGCCCAATGTTCCTATCCAGAATTGGCCAGCTGCTGGTTACTCGATTCCTGGAGTCATGCCCATGGGTGGTCAAAGAGATCTGCAGACACTTATGCAGATAACGGCTCAGACTAGGGGCTTGACTCCACCACAATCAGCTGGGAGCTCTGTTCAGTATCCACCATCTAGTTTCTATGGCATGGGGCAAGTTGCTCCAGTTAATGGAACAACGACAATGGGAGTGGGTAAAACTCAATCAACAACTCCAGTGGCATCAACCACTTCACAATCTGCAAAGGATTATGATTTTTCGTCCTTAACTCAAGGGATGTTTGCAAAGCCTTGA 1440 0.4472 MNEKANVTKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARDGKPKSPSRLREEKSSSHWQRPVERSGHGYAAASENTVEERKKTQPSNPNPAARISILTPPKASEHVAPVSKPQHVEKAEPVAPQPQVETSKQVTDTAQNIPAKVDYATDLFNLLSMDGPSENGSEATGTTTEDNNWAGFQSAPVASTTEKASPPKAVESTPQSASGIEDLFKDSPSVTPSLAAEKPQKDVKNDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSNVGDPKYPAGIQQPRPNVPIQNWPAAGYSIPGVMPMGGQRDLQTLMQITAQTRGLTPPQSAGSSVQYPPSSFYGMGQVAPVNGTTTMGVGKTQSTTPVASTTSQSAKDYDFSSLTQGMFAKP* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1449 479 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Amo18g1449 479 PANTHER ARF GTPASE ACTIVATOR 1 478 - -
Amo18g1449 479 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Amo18g1449 479 CDD ArfGap 19 117 - -
Amo18g1449 479 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Amo18g1449 479 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Amo18g1449 479 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Amo18g1449 479 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Amo18g1449 479 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Amo18g1449 479 MobiDBLite consensus disorder prediction 125 224 - -
Amo18g1449 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 478 IPR044520 GO:0005096
Amo18g1449 479 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Amo18g1449 479 MobiDBLite consensus disorder prediction 442 464 - -
Amo18g1449 479 MobiDBLite consensus disorder prediction 241 295 - -
Amo18g1449 479 MobiDBLite consensus disorder prediction 241 314 - -
Amo18g1449 479 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1449 Amo-Chr18 27393373 27399878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1449 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 4.78e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1449 K12486 - gmx:100789910 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1449 18 27393373 27399878 Amo18g1449 18 27393373 27399878 ECH