Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1431 ATGGCCAATGAACTAACTCACAACTCACGTGCTTCACACATGCACGTTCACTACGACGACGACGACAGCGACGACTCAGGCGACCAAGAAGAAGGCGTGAACACTTCTGACGACAGCTACGATGACGACAACGACAACGAAGAAAGCCAGCAGGACGAGAAGGCGGGGGTGACAGGTGATGAGCGGCGGAGAGGGTGGTGGTTACGGCGGGGGAAATGGGCGGAGGAGTGGAACAGGGTGCTGGTGCTGGTGTCGGCGATGGGTCTGTTCGTGGACCCATTGGTGTTGTACGCGGTGTCGATAAGCGAGACATGCATGTGCGTGTTCGTTGATGGGTGGTTGGCGATAACGGTGACGGTGCTGCGGTGCATGACGGACACGTTGCACATCTGGAACATCTGGTTGCAGTTAAAGATGGCAAAAGCTTCGCTTCTTGGCACCACTTCTTCTTCTTCTTCTTCTCCTTTAAATTCTCTTCGCTTCAGAAAGGCAAAGTGGGCTTTCTTCGTTAACCTCTTTCTCATTCTCCCTCTACCCCAGATGGTGCTATGGGAAGTAATCCCTTCTTTGTTGGAGGAAGGATCAATAACAGTGGCAATGACAGTGTTGTTAATGATGTTCCTATTTCAATACCTTCCCAAAATTTATCACTCGGTTTGCCTCTTGCGTCGCATGCAAACCCTCACTGGCTTCGTTTTTGGGACCGTTTGGTGGGGCATTGCCCTCAACTTGATCGCATATTTTGTCGCTTCTCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGGTGCAGAGGGCAGCAAAGTGCCTAAAAGAGCAGTGTAGAAAGACAGCTGGTTGTGGAGTGAGAAGCTTATCTTGCAAGCAGCATATATATTATGGAAGCAATGGGATGGTGAAGGAGAAACCAAGGTTGGCTTGGGCAGCAAATAGGGAAGCAAGGTCAACATGCCTTGATGGCCCTGACAACTATGACTATGGTGCTTATCAATGGACCGTTCAGCTTGTCACCAATGATAGCCGCTTGGAAAAGATCCTCTTCCCTATCTTCTGGGGCCTCATGACTCTCAGCACATTTGGGAGCCTAGAGAGCACAACAGAATGGCTTGAAGTTGTTTTCAACATTATTGTATTAACTAGTGGCCTTCTTCTCGTCACTATGTTGATTGGAAACATTAAGGTGTTTTTGCATGCGACAACGTCAAAGAAGCAAGCAATGCAATTGAAGATGAGAAATATTGAGTGGTGGATGAGCAAGAGGCGGCTGCCACAAGGCTTTAGGCAACGTGTGCGCAACTACGAGAGGCAGCGATGGGCTGCTACACGTGGCGTTGACGAATGCCAGATGATCAAAAACCTCCCTGAGGGGCTGAGGAGGGACATTAAGTACCATCTCTGTTTAGATTTGGTTAGACAGGTACCACTATTTCAGCATATGGATGATCTGGTCTTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTCACAAAGGGAGAAACGATCACTAGAGAGGGAGATCCAGTTCAAAGAATGCTATTTGTCGTAAGGGGCCACCTTCAAAGTAGCCAAGTCCTAAGAGATGGGGTGAAGAGTTGTTGCATGCTAGGGCCAGGGAACTTCAGCGGCGACGAACTCCTCTCTTGGTGTCTAAGGAGGCCGTTCATCGAGCGCCTGCCGCCGTCCTCATCCACATTGGTCACGCTAGAAACCACCGAGGCATTCGGCCTTGAAGCCGAGGATGTAAAGTATGTGACACAACATTTTAGGTATACTTTTGTGAAGGAAAAAGTGAAAAGGAGCGCGAGGTATTACTCGCCAGGGTGGAGAACTTGGGCTGCCGTGGCTATTCAATTGGCTTGGAAAAGGTACCGGCATCGGTTGACTTTGACTTCTTTGTCCTTTATTAGGCCTAGAAGGCCTGTGTCAAGGTGCTCTTCCTTGGAAGAGGATAGGCTTCGGCTCTATACGGCCATGTTAACTTCACCAAAGCCTAATCAAGAGGATTTTGACGTTTCATAA 2022 0.4911 MANELTHNSRASHMHVHYDDDDSDDSGDQEEGVNTSDDSYDDDNDNEESQQDEKAGVTGDERRRGWWLRRGKWAEEWNRVLVLVSAMGLFVDPLVLYAVSISETCMCVFVDGWLAITVTVLRCMTDTLHIWNIWLQLKMAKASLLGTTSSSSSSPLNSLRFRKAKWAFFVNLFLILPLPQMVLWEVIPSLLEEGSITVAMTVLLMMFLFQYLPKIYHSVCLLRRMQTLTGFVFGTVWWGIALNLIAYFVASHAAGACWYLLGVQRAAKCLKEQCRKTAGCGVRSLSCKQHIYYGSNGMVKEKPRLAWAANREARSTCLDGPDNYDYGAYQWTVQLVTNDSRLEKILFPIFWGLMTLSTFGSLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQGFRQRVRNYERQRWAATRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWKRYRHRLTLTSLSFIRPRRPVSRCSSLEEDRLRLYTAMLTSPKPNQEDFDVS* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1431 673 CDD CAP_ED 475 581 IPR000595 -
Amo18g1431 673 SUPERFAMILY cAMP-binding domain-like 401 589 IPR018490 -
Amo18g1431 673 SUPERFAMILY Voltage-gated potassium channels 71 396 - -
Amo18g1431 673 Gene3D Helix hairpin bin 400 466 - -
Amo18g1431 673 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 11 669 - -
Amo18g1431 673 MobiDBLite consensus disorder prediction 23 49 - -
Amo18g1431 673 Pfam Cyclic nucleotide-binding domain 495 583 IPR000595 -
Amo18g1431 673 ProSiteProfiles cAMP/cGMP binding motif profile. 475 585 IPR000595 -
Amo18g1431 673 SMART cnmp_10 475 604 IPR000595 -
Amo18g1431 673 MobiDBLite consensus disorder prediction 1 58 - -
Amo18g1431 673 Pfam Ion transport protein 122 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo18g1431 673 Gene3D Jelly Rolls 473 591 IPR014710 -
Amo18g1431 673 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 11 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1431 Amo-Chr18 26962622 26969615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1431 70 671 Ion Channels AT5G54250 77.705 0.0 980
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1431 K05391 - zju:107430493 1053.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1431 18 26962622 26969615 Amo18g1431 18 26962622 26969615 ECH