Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1418 ATGGCCAAGTCTTGTTCTAGTGAAAAGAACAATAATAATGGATTGAAGAAGGGTCCATGGACTCCGGAGGAAGATCAAAAACTCATTGATTACATTCAGAAACATGGACATGGCAAGTGGCGAACCCTTCCTAAGAATGCAGGATTAAAGAGATGTGGAAAGAGTTGCCGGCTAAGGTGGGCTAATTACTTGAGGCCTGATATAAAGAGAGGAAGATTCTCATTTGAAGAAGAAGAAATGATCATCCAGTTACACACTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAATTTACCCGGAAGAACAGATAATGAGATTAAGAATTATTGGAACACTCACATCAAGAAGAAATTGTTGAAGATGGGGATTGATCCAATTACTCATACACCACGCCTTGATGTTCTTCAACTCTCTTCAATTCTAAGCTCAACCTTATACAATAACAATAATTCACCCCAAATTAATAATAATTATTACCCTACCCTCTTTGGTATTGGATCATCAAGTGTTGCAAATAATCCAAGCCAAGTCCTAAGTTTGCTCGCATCTCTTCTATCGTATCAAAGCAGAAACAATGACAACATTTTAAATCAGCAGATTCGAACAGAATTGTCTCCGACAGAAAATAACAGCAATTTTAGTCAAAAATATTTCATCCAACAAAACCAACTTGGTACTATTAGCCCTCTATTATTGCAAAATCAAATTCACCTTAACCCTAGCCAAGCCTTCCAACCAAACCAACCTTGTGCTAATAATTTTCATGTGGAAACCCAAAACATGAAATCAAAATTAGAGCCTCAAATCCCTTTTAACCATCAAAATACATTACCAAATTTGTGGCACTATAATGGTGGCGGTTACATGGCTAATCAACAAGGTTTTCCTTCCTTGCTGGAAAATAATCAGATTTTGTGTCGTGAAGAGATTATGGCTAATTTCAATTTGATGAACTCAATGTTATCCACTTCTACAGCTTCATCTTCTAGCCCCAGTAATTTGAATTCATCATCTTCAACAACATTTGTCAATGGGACAACAACCACCGAAGATGAAAGGGACAGTTATGGAAGCAACATGTTGATGTATAAATATAATATATCAAATAGATTGAATAACTCTGGACTTTTGTGA 1137 0.3641 MAKSCSSEKNNNNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEMIIQLHTVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPITHTPRLDVLQLSSILSSTLYNNNNSPQINNNYYPTLFGIGSSSVANNPSQVLSLLASLLSYQSRNNDNILNQQIRTELSPTENNSNFSQKYFIQQNQLGTISPLLLQNQIHLNPSQAFQPNQPCANNFHVETQNMKSKLEPQIPFNHQNTLPNLWHYNGGGYMANQQGFPSLLENNQILCREEIMANFNLMNSMLSTSTASSSSPSNLNSSSSTTFVNGTTTTEDERDSYGSNMLMYKYNISNRLNNSGLL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1418 378 MobiDBLite consensus disorder prediction 326 355 - -
Amo18g1418 378 Gene3D - 14 70 - -
Amo18g1418 378 Gene3D - 72 119 - -
Amo18g1418 378 CDD SANT 72 115 IPR001005 -
Amo18g1418 378 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Amo18g1418 378 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Amo18g1418 378 CDD SANT 19 64 IPR001005 -
Amo18g1418 378 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Amo18g1418 378 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 364 - -
Amo18g1418 378 SMART sant 69 117 IPR001005 -
Amo18g1418 378 SMART sant 16 66 IPR001005 -
Amo18g1418 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Amo18g1418 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Amo18g1418 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 364 - -
Amo18g1418 378 MobiDBLite consensus disorder prediction 1 22 - -
Amo18g1418 378 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Amo18g1418 378 MobiDBLite consensus disorder prediction 1 17 - -
Amo18g1418 378 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1418 Amo-Chr18 26536456 26538357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1418 1 148 MYB Transcription Factor Family AT4G21440 81.081 1.39e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g1418 Myb_DNA-binding 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1418 K09422 - gmx:100820398 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1418 18 26536456 26538357 Amo18g1418 18 26536456 26538357 ECH