Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1417 ATGGATTTGCTTCGATCAAATCTTTCCCGCGTTCGCATCCCCGAACCCACCAATCGCATCTTCAAGCATGAATGCTGCCTCTCCTTCGATACCCCCAAGTCAGAGGGTGGGTTGTACATCGACATGTTCACTTTCCTTGCCTTTGGGAAGGACTGTGTGGGTTGGAATTTCGAGAAGACTGGTAACCCTGTTTATTTGCATGTAAAGAAGACCAAGAAGCTGGTTCCAGAAGACAGGCCTACCAAGAAACCAACCCGCTTGGCGATAGGGGTTGAAGGGGGATTCGACAACAATGAACCCGAATATGAAGAAACTCATAGTATAGTCATTTTACCAAACTATATATCTCTTCCATTCCCATCTGTTGAATTGCCAGAGAAGGTACTTGTTTATGGTTGCAGCTTGGTGACTGCTGATAAGAAAACAGTTAGTACCTATGCAATGAATTTACAGCAACTTGACAATGGTGTTGTCATCCCTCCGTCTGGTTGGAAATGTGCCAAGTGTGACAAGACGGATAATCTTTGGCTAAATCTGACTGATGGGATGATTCTTTGTGGGAGGCGAAATTGGGATGGAAGTGGTGGAAACAACCATGCTGTTGAGCATTACAATGAGACAGGCTACCCTCTTGCTGTAAAGCTCGGGACTATCACTGCTGATTTGGAAGCAGCAGACGTTTACTCGTATCCAGAGGACAACAGCGTCTTAGACCCACATCTAGCACAGCATCTGGCCTTTTTTGGCATTGACTTCTCATCACTACAAAAGACTGAAATGACGACCGCCGAAAGAGAACTTGATCACAATACCAATTTCGATTGGAATCGGATCCAAGAAAGTGGAGAGGAAAAGGAACCAATTTTTGGACCTGGATACACGGGATTGGTCAATCTTGGCAACAGTTGTTACTTGGCAGCAACTATGCAAGTTGTGTTCACAACAAGATCATTCTGTTCAAGGTACTATATAAACCAAAGTCTGAAAAAGGCATTTGAGACGGCTCCTGCTGATCCAACCGTCGACTTGAATATGCAACTGACAAAACTGGCCCATGGTCTACTATCTGGCAAATATTCTATGCCAGTCTATGAGAATGATGACAATTCAAGCATTGATGCCACAACTAAGACTCCAAAACAGGAAGGGATACCTCCACGTATGTTCAAGTCTGTGATTGCTGCCAGTCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCATTTTCTCGATCAAGTTGAAAGATCTAATGCTGGGAAAGCTGAACTAGATCCTGCAAAGTGTTTCAAGTTTGGTATTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCATATAATAAAAGACAAGACTACATTCTATCTCTTAATATCCCATTGCACGAAGCAACTAATAAAGAAGAAATGGAATTATTTCGCAAATTGAAAGCAGAGAAGCTTTCTGAAGGGAAGGATGTGTCGGCCGAAGAGATTGTACGTCCAAGAGTTCCTTTAGAAGCTTGCCTTAGAAACTTCTCAGCTCCAGAGGAGATACATGATTTTTACAGCACTGCCTTAAAAGCAAAGACAACAGCATTGAAGACAGCTGGTTTCACATCATTCCCTGATTACCTCGTGTTACATATGAGGAAATTCGTTATGGAGGAGGGATGGGTGCCCAAAAAGCTTGATGTGTACATAGATGTTCCTGATATCATAGATATTAATCATATGCGTAGCAAAGGTCATCACCCAGGGGAAGAACTGTTACCAGATGCGGAACCCATTGACGAGGATTCAAACCAACCTTCCGCCAATGAAGACATTGTGGCACAGCTGGTTTCCATGGGTTTTAACCAGCTTCATTGTCAGAAGGCAGCTATTAACACCTCAAATGCTGGAGTAGAGGAGGCAATGAATTGGTTACTATCTCACATGGATGATCCAGATATTGACAGTCCTATTTCAAAAGGGAACAGCTCTGACAACGTTGATCAATCAAAAGTGGACATACTCATTTCTTTTGGATTTGAAGATCATGTTGCTCGAAAGGCATTGAAGGCATCGGGTGAAGACATTGAGAAGGCAACAGAGTGGATATTCAGCAATCCCGATGCATCAGTTTCTAGTATGGATGCTAGTGCATCAAACACAACCTCTGCTTCAAATGATGTTGGCTTGTCAGATGGAGGAGGAAAATATCGACTTATAGGAATTGTTAGCCACATGGGAACCTCGACACATTGTGGTCACTATGTAGCTCACATTTTGAAAGAAGGTAGATGGGTTATTTTCAATGACGCCAAGGTTGCGGTTTCGGTCAATCCTCCCAAGGACATGGGCTATCTATATTTTTTCGAGAGGATTGATGGTTGA 2373 0.4286 MDLLRSNLSRVRIPEPTNRIFKHECCLSFDTPKSEGGLYIDMFTFLAFGKDCVGWNFEKTGNPVYLHVKKTKKLVPEDRPTKKPTRLAIGVEGGFDNNEPEYEETHSIVILPNYISLPFPSVELPEKVLVYGCSLVTADKKTVSTYAMNLQQLDNGVVIPPSGWKCAKCDKTDNLWLNLTDGMILCGRRNWDGSGGNNHAVEHYNETGYPLAVKLGTITADLEAADVYSYPEDNSVLDPHLAQHLAFFGIDFSSLQKTEMTTAERELDHNTNFDWNRIQESGEEKEPIFGPGYTGLVNLGNSCYLAATMQVVFTTRSFCSRYYINQSLKKAFETAPADPTVDLNMQLTKLAHGLLSGKYSMPVYENDDNSSIDATTKTPKQEGIPPRMFKSVIAASHPEFSSMRQQDALEFFLHFLDQVERSNAGKAELDPAKCFKFGIEDRILCSSGKVAYNKRQDYILSLNIPLHEATNKEEMELFRKLKAEKLSEGKDVSAEEIVRPRVPLEACLRNFSAPEEIHDFYSTALKAKTTALKTAGFTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDINHMRSKGHHPGEELLPDAEPIDEDSNQPSANEDIVAQLVSMGFNQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDSPISKGNSSDNVDQSKVDILISFGFEDHVARKALKASGEDIEKATEWIFSNPDASVSSMDASASNTTSASNDVGLSDGGGKYRLIGIVSHMGTSTHCGHYVAHILKEGRWVIFNDAKVAVSVNPPKDMGYLYFFERIDG* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1417 790 PIRSF UBP 3 789 IPR016652 GO:0004843|GO:0016579
Amo18g1417 790 SMART uba_6 664 701 IPR015940 -
Amo18g1417 790 SMART uba_6 605 643 IPR015940 -
Amo18g1417 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 239 IPR013083 -
Amo18g1417 790 SUPERFAMILY UBA-like 650 704 IPR009060 GO:0005515
Amo18g1417 790 ProSiteProfiles Zinc finger UBP-type profile. 142 252 IPR001607 GO:0008270
Amo18g1417 790 Pfam Zn-finger in ubiquitin-hydrolases and other protein 166 240 IPR001607 GO:0008270
Amo18g1417 790 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 733 751 IPR018200 GO:0004843|GO:0006511
Amo18g1417 790 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 294 788 IPR028889 -
Amo18g1417 790 MobiDBLite consensus disorder prediction 582 601 - -
Amo18g1417 790 SUPERFAMILY Cysteine proteinases 290 789 IPR038765 -
Amo18g1417 790 SUPERFAMILY RING/U-box 143 252 - -
Amo18g1417 790 Gene3D - 604 639 - -
Amo18g1417 790 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 603 644 IPR015940 -
Amo18g1417 790 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 789 - -
Amo18g1417 790 Gene3D - 640 708 - -
Amo18g1417 790 Gene3D Cysteine proteinases 287 790 - -
Amo18g1417 790 CDD UBA1_atUBP14 605 649 - -
Amo18g1417 790 Pfam Ubiquitin carboxyl-terminal hydrolase 294 785 IPR001394 GO:0004843|GO:0016579
Amo18g1417 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 105 IPR013083 -
Amo18g1417 790 Pfam UBA/TS-N domain 664 699 IPR015940 -
Amo18g1417 790 Pfam UBA/TS-N domain 605 641 IPR015940 -
Amo18g1417 790 SMART Zf_UBP_1 165 220 IPR001607 GO:0008270
Amo18g1417 790 CDD Peptidase_C19B 295 786 - -
Amo18g1417 790 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 295 310 IPR018200 GO:0004843|GO:0006511
Amo18g1417 790 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 662 702 IPR015940 -
Amo18g1417 790 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 789 - -
Amo18g1417 790 Pfam Variant UBP zinc finger 11 73 IPR041432 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1417 Amo-Chr18 26528496 26534396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1417 602 667 C2H2 Transcription Factor Family AT1G04850 34.848 5.74e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1417 K11836 - gmx:100805602 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1417 18 26528496 26534396 Amo18g1417 18 26528496 26534396 ECH