Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1390 ATGGAAGCCTTTAGCTTTCTCTTATTTTGCTTCTCTCTGCTTATGGCTGTCTCTATTGCAAGAGACACAATCAACACACTGCAATCTATAAGTGATGGTGAGATATTAGTTTCAGCAGATGAAACTTTTGCATTAGGATTCTTCAGCCCTGGAACTTCCAAGAACCGTTATGTCGGAATTTGGTTTAACAAAGATCCAACAAAGGCAATAGTATGGGTTGCAAACAGAGAAAAACCGCTCACTGACTCCTCAGGGGTTTTGAAGGATGACACCAATAGCGAAAAGGAAGATTTTGTGCGGCAACGTTTTGACTATCCAGGCGACACAATCTTGCCTGGACAGAAGTTGGGAAGAAACTTAGCTACAGGACTAAATCGGAGGACAACATCATGGAAAAGCTCTGATGATCCTTCTCCAGGTAGCTTTAGCTATCAATTCGATATTGATGGATATCCGCAATTAGTATTAAGAGAAGGCACAACAAAAAGATTTCGTTTTGGATCATGGAATGGTATTCAATTTAGTGGGGCACCTCAATTGAAAAATGAGTCTGTATTCAGATTTAGCATGATTTCTAATGAGGAAGAGGTGTATATTGTATATTGGAGTGTTGATAGTTCAGTTCATCAGAGGCTGCAGACAGCAACGGATGGATTCAGCCAGCGGAGAAGTTGGAGGGGTGGAAATACAGGTTGGACCACAGTTTCGCACATACCGGTGGATGACTGTGATTATTATGGAAAATGTGGAGCATATGCTAGTTGTGATACAAACAGGTTTCCCATGTGTAATTGCTTGGATGGATTTGTGCAGAATACAACTGATTCATCATGTGGTTGTGTTAGGAGAACCTCATTGAGTTGCAATCATTCAGATGGGTTTGTGAAGTTTTCGGGGCTAAAGTTACCAGACACTGAAGGGACATGGTTTAATACAAGTATGAGTTTTGAGGATTGTAGAATTTTGTGCGTGAAAAACTGCTCTTGTACGGCTTATGCAGCTTTGGATGTCAGTGAAGGGCCAAATTCAAATGGTTGTTTACTTTGGTTTGGTAATCTGATGGATATGAAAGTGATGACTACATCTGAAGATATTTATGTAAAGATGGCAGGGAAAGATGTAGAAGCAATTGTACAAAAAAGATTGCCGAAGTTCAAGAAAAAGAAGCAAAAGATTACCACTGCCGTAATCTGGGTGCTGTCTTCTGGAATTTTGATCTTATGCTTGGCCGTCATCATTTATAGATGGGAGATGCGTAAGAAAGGAAAGATAAAAGAAGAAAGAGAATCAGATGCAATAAATAGTCAGCATGATGAGGAAGATCTAGAATTGCCCTTATTTGATTGTGAGAAGGGAAAGCTACTAGATTGGGCGAAGCGTTTTCATATCATCAATGGGATTGCCAGAGGCCTTCTTTATCTTCATCAAGATTCAAGACATAGAATAGTTCATAGAGATCTCAAGGCCGGGAATGTTTTGTTAGATGATGAATTGAATCCTAGAATCTCGGACTTTGGACTAGCTAAGAAATGA 1533 0.3986 MEAFSFLLFCFSLLMAVSIARDTINTLQSISDGEILVSADETFALGFFSPGTSKNRYVGIWFNKDPTKAIVWVANREKPLTDSSGVLKDDTNSEKEDFVRQRFDYPGDTILPGQKLGRNLATGLNRRTTSWKSSDDPSPGSFSYQFDIDGYPQLVLREGTTKRFRFGSWNGIQFSGAPQLKNESVFRFSMISNEEEVYIVYWSVDSSVHQRLQTATDGFSQRRSWRGGNTGWTTVSHIPVDDCDYYGKCGAYASCDTNRFPMCNCLDGFVQNTTDSSCGCVRRTSLSCNHSDGFVKFSGLKLPDTEGTWFNTSMSFEDCRILCVKNCSCTAYAALDVSEGPNSNGCLLWFGNLMDMKVMTTSEDIYVKMAGKDVEAIVQKRLPKFKKKKQKITTAVIWVLSSGILILCLAVIIYRWEMRKKGKIKEERESDAINSQHDEEDLELPLFDCEKGKLLDWAKRFHIINGIARGLLYLHQDSRHRIVHRDLKAGNVLLDDELNPRISDFGLAKK* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1390 510 Pfam PAN-like domain 288 356 IPR003609 -
Amo18g1390 510 Pfam Protein kinase domain 458 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1390 510 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 137 IPR036426 -
Amo18g1390 510 Gene3D - 15 169 IPR036426 -
Amo18g1390 510 PANTHER - 446 509 - -
Amo18g1390 510 PANTHER - 86 449 - -
Amo18g1390 510 PANTHER - 11 88 - -
Amo18g1390 510 Pfam D-mannose binding lectin 91 132 IPR001480 -
Amo18g1390 510 ProSiteProfiles Protein kinase domain profile. 331 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1390 510 Gene3D Hepatocyte Growth Factor 284 370 - -
Amo18g1390 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Amo18g1390 510 SMART ntp_6 289 369 IPR003609 -
Amo18g1390 510 Pfam S-locus glycoprotein domain 164 272 IPR000858 GO:0048544
Amo18g1390 510 SUPERFAMILY Protein kinase-like (PK-like) 446 509 IPR011009 -
Amo18g1390 510 ProSiteProfiles Bulb-type lectin domain profile. 21 169 IPR001480 -
Amo18g1390 510 SMART blect_4 27 137 IPR001480 -
Amo18g1390 510 CDD PAN_AP_plant 284 370 - -
Amo18g1390 510 ProSiteProfiles PAN/Apple domain profile. 288 370 IPR003609 -
Amo18g1390 510 Gene3D Transferase(Phosphotransferase) domain 1 437 510 - -
Amo18g1390 510 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 446 509 - -
Amo18g1390 510 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 86 449 - -
Amo18g1390 510 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1390 Amo-Chr18 25688494 25691493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1390 406 509 Receptor kinase-like Gene Family AT4G21410 51.923 6.58e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1390 S_locus_glycop 8.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1390 - - adu:107462379 681.404