Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1387 ATGCAAAACCAGAGAGTGCTATGGTTTTGGTCCCTTCTATTCTCATTTATATTAAGAAGCTCCACTTCACTAGACAATATAACTCCTGTTCAATCCATCACCGATGGAGAGACATTAATTTCGCTTGGAGGAACCTTTGAACTTGGCTTCTACAGCCCCGGAAATTCAAATGGCCGATACTTAGGCATATGGTACCATAACATATTCCCTAAGGTAGTGGTGTGGGTGGCAAACAGAGAAAAACCCCTCAACAACACCTCAGGAGTTCTAAAACTCACCGGCGAAGGACTACTTGTCCTTGTTAATCGCAGCAGCAACAGCAGCATTGTGTGGTCCACCAACATGTCAAGCAAAGTGGAAGATAAATGGAATCCAGTTGCACAGCTCTTGGAGTCAGGAAACCTTGTTGTCAAAGATGGCCATAATGGAGACCACTTTCTATGGCAGAGCTTTGATTATCCTTGTGATACTTCGTTGCCAGGAATGAAGCTGGGATGGGACCTTGGAACAGGTCTAGAGAGGACTCTATCATCTTCAAAAAGTATCGATGATCCCGGCCGCGGACACTACACACTTAGAATAGACCTTAGAGGTGATCCACAAATAGTTCTAATGAATGGAAATGCCACAACAATTAGAGTAGGGCCATGGAATGGGCTAATGTTTTCAGGAGCTACAACTTATTTGCGCTATAGCCAATTTTCATCTCAATTTGTTTTCAATGAACAAGAAGTGTTTGTTAGGTTCAGACCGGAAAATACATCCAAATATATTAGAGGTGTAGCGTACCCTTGGGGAGCTTTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTATTTCTATACCGGAGGCCGAATGTGACAAGTATGCTATTTGTGGTGCAAATTCTATTTGCAGTACTACTCCTACTCCTGTCTGTTCATGCCTTGAAGGATTTGCACCAAAATATCCTGGAAAATGGAAGGAATCTGATTGGTCTGATGGTTGTGTTAGGATCACTCCTTTAAGTTGCAGCAGAGATGGATTCAAGAAGGTCACCGGCATAGTGTTGCCGGACACGTCTTCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTGAAGAATTGTTCTTGTACGGCATATTCCAATTTGGATATCCGTGATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTATTGACATTAGACAAGGGTCACAAGACTTCTATATCCGAATAGGCATCATTGTTGGCTTTATATTGTTCATCATGATCGTAATACTTGGACTGAAATTATTTCTATGGAGAAAAAAACTTGTGGAGACAGATATATTTTGGTTGAAGCAGCGTGATCACAAACGGGAAAAGGAGGATATGGACCTCCCAACATTTGATTTATCAACCATAGTTCATGCCACTGATCAATTTTCTAGCCGCAACGAATTGGGAAAAGGTGGATATGGACCAGTTTATAAGGGTGTACTTACAAATGGAACCCAGATTGCGGTCAAGAGACTTTCCAAGAACTCCGACCAAGGATTGCAGGAGTTCAAAACGGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAACTTCTTGGTTGTTGCATTCAGCAAGAAGAGAAACTTCTGATCTATGAGCTCATGCCCAACAGAAGTTTGGACTATTTTATTTTTGGTCCATTCCTTTACTATCTTGAATTTATAATCATGTTAACATTTGACGTTCTCAACATGATAGATGATGCTAGAAGAAAATTATTAGATTGGACCAAGCGCTTTCACATTATTAGTGGCACAGCTCGGGGTTTAGTTTATCTGCATCAGGACTCTAGACTAAGAATCATTCATAGAGATCTAAAAACTAGTAATATTCTTCTTGATGAAGACATGAATGCAAAAATATCAGACTTCGGTGTTGCCAGGACATTTGCTGCCGATCAAACTGAGGCCAAAACAAAAAGAGTGATGGGAACTCACGGTTATATTTCTCCTGAGTATGCGGTGCGTGGATCTTTCTCAATGAAGTCTGATGTGTTTGCCTTTGGTGTAATCATGCTTGAGGTAGTCAGTGGGAGGAAGAACAGAGATTTCCGTGTTCCTGACCAAAATATTAACCTTCTTGGACATGCATGGGAGCTGTGGAATGAGGGGAGGGCTTTGGAGCTGGTAGATGAATCAGTGCGCGATTCGGTCATTGAAGTTGAAGCATTGAGATGTATACAGATAGGGCTGTTATGTGTGCAAGGGAGACCTGAAGATAGGCCTAACATGTCATCTGTAGTTCATGTGTTGGACGACGATAAACCACTGCCTCGGCCGAGGCTGCCTGCATTTTATTCACACCAAGAAGACTCTTCATTAAGTAATCATACAATTTATTCAGCAAACGAGGTTAAAATTGTAACTGAATTTATGTATTCTGTTGGGCTGAATTTGTGGGACGTGAGACTTCTTGATTGTTGTCATGAGCTAAGGGAAGAATGGTTTAATACTCTTTGGTACTATCCATTAGAACAAAGGCAGGTT 2553 0.4168 MQNQRVLWFWSLLFSFILRSSTSLDNITPVQSITDGETLISLGGTFELGFYSPGNSNGRYLGIWYHNIFPKVVVWVANREKPLNNTSGVLKLTGEGLLVLVNRSSNSSIVWSTNMSSKVEDKWNPVAQLLESGNLVVKDGHNGDHFLWQSFDYPCDTSLPGMKLGWDLGTGLERTLSSSKSIDDPGRGHYTLRIDLRGDPQIVLMNGNATTIRVGPWNGLMFSGATTYLRYSQFSSQFVFNEQEVFVRFRPENTSKYIRGVAYPWGALQVLHWSIQTRGWETLISIPEAECDKYAICGANSICSTTPTPVCSCLEGFAPKYPGKWKESDWSDGCVRITPLSCSRDGFKKVTGIVLPDTSSSWYNRTMNLLECKEFCLKNCSCTAYSNLDIRDGGSGCLIWFHDLIDIRQGSQDFYIRIGIIVGFILFIMIVILGLKLFLWRKKLVETDIFWLKQRDHKREKEDMDLPTFDLSTIVHATDQFSSRNELGKGGYGPVYKGVLTNGTQIAVKRLSKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYFIFGPFLYYLEFIIMLTFDVLNMIDDARRKLLDWTKRFHIISGTARGLVYLHQDSRLRIIHRDLKTSNILLDEDMNAKISDFGVARTFAADQTEAKTKRVMGTHGYISPEYAVRGSFSMKSDVFAFGVIMLEVVSGRKNRDFRVPDQNINLLGHAWELWNEGRALELVDESVRDSVIEVEALRCIQIGLLCVQGRPEDRPNMSSVVHVLDDDKPLPRPRLPAFYSHQEDSSLSNHTIYSANEVKIVTEFMYSVGLNLWDVRLLDCCHELREEWFNTLWYYPLEQRQV 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1387 851 Pfam PAN-like domain 342 407 IPR003609 -
Amo18g1387 851 Gene3D Hepatocyte Growth Factor 340 416 - -
Amo18g1387 851 SUPERFAMILY Protein kinase-like (PK-like) 464 793 IPR011009 -
Amo18g1387 851 Pfam D-mannose binding lectin 73 180 IPR001480 -
Amo18g1387 851 PANTHER - 14 807 - -
Amo18g1387 851 CDD PAN_AP_plant 338 418 - -
Amo18g1387 851 SMART ntp_6 342 418 IPR003609 -
Amo18g1387 851 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Amo18g1387 851 ProSiteProfiles PAN/Apple domain profile. 342 419 IPR003609 -
Amo18g1387 851 PIRSF SRK 2 818 IPR024171 GO:0004674
Amo18g1387 851 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 14 807 - -
Amo18g1387 851 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Amo18g1387 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Amo18g1387 851 Gene3D Phosphorylase Kinase; domain 1 454 556 - -
Amo18g1387 851 Gene3D - 20 151 IPR036426 -
Amo18g1387 851 ProSiteProfiles Bulb-type lectin domain profile. 24 150 IPR001480 -
Amo18g1387 851 SMART blect_4 30 154 IPR001480 -
Amo18g1387 851 SMART serkin_6 481 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1387 851 Gene3D Transferase(Phosphotransferase) domain 1 583 779 - -
Amo18g1387 851 CDD B_lectin 30 154 IPR001480 -
Amo18g1387 851 CDD STKc_IRAK 487 774 - -
Amo18g1387 851 Pfam Protein tyrosine and serine/threonine kinase 484 773 IPR001245 GO:0004672|GO:0006468
Amo18g1387 851 ProSiteProfiles Protein kinase domain profile. 481 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1387 Amo-Chr18 25641078 25646130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1387 469 787 Receptor kinase-like Gene Family AT4G11530 53.583 9.01e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1387 PK_Tyr_Ser-Thr 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1387 - - aip:107611884 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1387 18 25641078 25646130 Amo18g1387 18 25641078 25646130 ECH
Amo18g1387 18 25641078 25646130 Amo08g1494 08 24448552 24451601 hybridization
Amo03g0249 03 4552993 4557236 Amo18g1387 18 25641078 25646130 PCT