Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1373 ATGTGTAATTGCTTGGATGGATTTGTGCAGAATACAACTGATTCATCAAGTGGTTGTGTTAGGAGAACTTCATTGAGTTGCAATCATTCAGATGGGTTTGTGAAGTTTTCGGGGCTAAAGTTACCAGACACTGAAGGGACACGGTTTAATAGAAGCATGAGACTTGAGGATTGTAGGATCTTGTGCTGGAACGATTGCTCRTGTATGGCTTATGCAGCTTTGGATGTCAGCAAAGGGCCAAATGGTTGTTTACTTTGGTTTGGTAATCTGATAGATATGAAAGTGATGAATGCATCTGTTGAAGATATTTATATAAAGATGGCAGGGAAAGAAGTAGAAGCAATTGAACAAAATAGATCAACGAAGTCCAAGAAACGGAAGCAAAAGATTATCATTGCCGTAAGCTGTGTGTTATCTTTTGGAATTTTGATCCTATGCTTGGCCTTCATAATCTATGGATGGAAGAAGTATCACAAAGGAAAGATAAAAGAAGAAACAGAATCAGGTGCAATAAATAGTCACCATGATGAGGATGATCTGGAACTGCCCTTATTTGATATGTGCACAGTTACTTCTGCAACAAGTAATTTTTCAAGTGACAATATACTAGGGACAGGTGGTTTTGGATCAGTTTATAAGGGTATCTTGGAAAATGGACGGGAAATAGCTGTCAAGAGACTTTCACAAAATTCAAGCCAAGGACTCCAAGAGTTCAAAAATGAAGTTATGCATATTGCCAAACTTCAGCACAGAAATTTAGTGAAGCTATTAGGGTATTGCATTCAAGCAGGGGAGAGAATATTGATTTATGAATTTATGCGCAACAAAAGCTTGGACTTCTTTATATTTGATTGTGAGAAGGGAAAGCTTCTAGACTGGCCAAAGCGTTTTCTTATTATTAATGGAATTGTTAGGGGTCTTCTCTATCTTCATCAAGATTCAAGACATAGAATAGTTCATAGAGATCTTAAGGCTGGAAATATTTTGTTAGATGACGAATTGAATCCTAGAATTTCAGACTTTGGACTAGCAAGAAGCTTTGTAGGAAATGAAAACCAAGCAAATACAAGGCACATTGTTGGAACTTACGGCTATCTGTCACCGGAGTACATAGTTGATGGGATATACTCAACAAAATCTGATGTCTACAGCTTCGGAGTACTGGTGTTAGAGATAGTTAGCGGGAAGAGAAATAGAGGATTCATCCATATTGATCACAATTTTAATCTTCTTGGGCATGCATGGACGCTTTTCGTAGAAGGCAAGTGCTTACAAATAGTTGATCCATCTATCAAAGACTCAATTGATTTTCCAGAAGTCCTAAGATCAATTCATGTTGGTCTGCTATGCGTGCAACGAAATTCAGAAGATCGGCCAAGCATGTCGTGTGTGCTTACGATGCTGAGTAGTGAATGGGCATTGCCTCATCCAAAGAAGCGAGGGTTCTTTGTTGAGAGAGATGTGGTTGGTAACCATTCTTCATCAAGCAACAATAAACTATCTGTTAATAATCTGACAGTTACTCAAGTCTCTCCCCGATAG 1542 0.3839 MCNCLDGFVQNTTDSSSGCVRRTSLSCNHSDGFVKFSGLKLPDTEGTRFNRSMRLEDCRILCWNDCSCMAYAALDVSKGPNGCLLWFGNLIDMKVMNASVEDIYIKMAGKEVEAIEQNRSTKSKKRKQKIIIAVSCVLSFGILILCLAFIIYGWKKYHKGKIKEETESGAINSHHDEDDLELPLFDMCTVTSATSNFSSDNILGTGGFGSVYKGILENGREIAVKRLSQNSSQGLQEFKNEVMHIAKLQHRNLVKLLGYCIQAGERILIYEFMRNKSLDFFIFDCEKGKLLDWPKRFLIINGIVRGLLYLHQDSRHRIVHRDLKAGNILLDDELNPRISDFGLARSFVGNENQANTRHIVGTYGYLSPEYIVDGIYSTKSDVYSFGVLVLEIVSGKRNRGFIHIDHNFNLLGHAWTLFVEGKCLQIVDPSIKDSIDFPEVLRSIHVGLLCVQRNSEDRPSMSCVLTMLSSEWALPHPKKRGFFVERDVVGNHSSSSNNKLSVNNLTVTQVSPR* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1373 513 CDD STKc_IRAK 203 468 - -
Amo18g1373 513 ProSiteProfiles Protein kinase domain profile. 197 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1373 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672|GO:0006468
Amo18g1373 513 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524
Amo18g1373 513 PANTHER GLYCOPROTEIN S6, PUTATIVE-RELATED 2 488 - -
Amo18g1373 513 SUPERFAMILY Protein kinase-like (PK-like) 181 468 IPR011009 -
Amo18g1373 513 SMART serkin_6 197 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1373 513 Pfam Domain of unknown function (DUF3403) 469 513 IPR021820 GO:0004674
Amo18g1373 513 CDD PAN_AP_plant 23 108 - -
Amo18g1373 513 Pfam Protein kinase domain 199 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1373 513 Gene3D Hepatocyte Growth Factor 23 105 - -
Amo18g1373 513 Gene3D Transferase(Phosphotransferase) domain 1 273 476 - -
Amo18g1373 513 ProSiteProfiles PAN/Apple domain profile. 27 108 IPR003609 -
Amo18g1373 513 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 488 - -
Amo18g1373 513 Gene3D Phosphorylase Kinase; domain 1 171 272 - -
Amo18g1373 513 Pfam PAN-like domain 27 93 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1373 Amo-Chr18 25126487 25130175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1373 112 513 Receptor kinase-like Gene Family AT4G05200 47.242 1.49e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1373 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1373 - - adu:107462379 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1373 18 25126487 25130175 Amo18g1373 18 25126487 25130175 ECH