Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1334 ATGATGAACAATCTTCCATTTCTCTTCGTCATTACAGGGATGGTTCTTCATTTTTTCTTTCTTCGTGATGTCTCAAGCGCAACGGATTCAATATCTATGGTTCAGCCTCTTCATGAAGGAAACACATTGGTTTCTAGTAATGGAACCTTTGAAATGGGGTTTTTCAGCCCAGGAAGTTCTTCAAACCATTACTTAGGTATTTGGTACAAGATTCTCCCGTTGAAAACCGTTGTTTGGGTTGCAAATAGATCCAACCCTGTCAAAGACAACACTAGCATACTCCACATAAACAACCAAGGGATTCTTCAACTTGTCAACAAGAACGGAACCGTCTTTTGGTCTACAAACTCCACCACAAAGATGAACCTTTCGAATCCGATTGCTCAGCTCTTAGATTCTGGAAATCTTGTTATTAGAGATGAGAATGACCAAGATTCCAAGAACTACTACGTCTGGCAAAGCTTTGATTATCCTTGTGATACACTCTTACCGGGGATGAAGCTCGGTTGGGATCTTAAAACCGGTCTTGAACGGCGGTTAACTGCTTGGAAGAATTGGGACGATCCCTCGCCGGGGAATCTTTCTTGGGGAATCTCGCTTGAGGGTTTTCCCCAAGGAATATTCTTGAAGGGCTCGAAAGAGTACTACCGTGTCGGTCCATGGATTGGTCTTCGTTTCAGTGGAACACCTGAATTGAAGCCCAATAACCTTTTTAGTTATAAATTCGTGTCGAACGAAAATGAAGTGTATTTTGTGTATAAGTATAATCTTGAAAAAAAGTCCCTTTTACTGAGACTCGTCATGAACGAAACCTTAGGTAACAGACACGGCTACATGTGGAACGATGGATCTTCGGGTTGGACGGAATTTTCTTCCCATTCGCCGAGAGAAGCGTGTGATCTCTATAATCACTGTGGTCCAAATGCGTATTGCAGCATCATAAGTGGCTATTCAACGTGCCAGTGTCTGAAGGGGTTCAAGCAAAAGTCATCACAAAACTGGACTGAAGGATGTTCTTCTTCATTGCTTGATGAGCAATCGAGATGCAACATGGATAATAAGACGGGTAGTCAGAGAGATGATAAGAATGGGTTTTCTAAAGTTGGAGGAATGAAATACCCAGATACTCGGCGTTCTTGGGTGAATGAGAGTATGAATCTTGATGAATGCAGGGATAAATGCAGAGAGAATTGTTCGTGTATGGCTTATGCAAACTCAGATATTAGAGAAGGTGGTAGTGGCTGTTTGATGTGGTTCGGTGTTCTCGACGATATCAAAGAGTTTTCTGATGGCGGTGCTGATATATACATTCGAACGATCATCGATGGGAAGGAAGGGCACAAAAAGAAGAAGGTAGGACTGATAGTCATCGGTACCAGTGCCTCTGTTCTTGTGGTGGTTCTGATTTTTGGTTACATTGGCCAGAGAATAATAAACTGCAGAGTTAAGAAGAATAATGATGCATATGAAGACTACTTGGATCTTCCTATCTTTGACCTTGCTACAATTGCAAAAGCAACTGAAGACTTTTCCATTAGTAATAAACTTGGAAAAGGTGGATTTGGGACTGTATATAAGGGAACTCTAGTTGATGGACAAAATATTGCTGTGAAGAGACTTTTACAGGGATCTAATTCTGGACAAGGGTTGACAGAATTTATGAATGAAGTTTTATTAATTGCTAAACTTCAACATCGCAATTTAGTGAAGCTTCTTGGTTGTTGCATTCAAGATGGAGAAAAGATGCTTGTCTATGAATACATGCCCAATAAGAGCCTAGACAATTTTATCTTCGGTCACAAGGATGGTAGAGTTATTTTAGATTGGCCTAACCGCTTCAACATTATATGTGGAATTGCTCGAGGATTACTTTATCTTCATCAAGATTCTCGACTAAGGATTATACATAGAGATCTCAAAGCTAGCAATGTATTGCTTGACAAAGAGTTAAATCCTAAAATTTCTGATTTTGGGATGGCGAAATCATTTGGAGGAAATCAAACAGAAGGAAATACAAGTAGGATTGTTGGAACATATGGTTATATGGCTCCTGAATATGCTATTTACGGATTATTCTCAATAAAATCTGATATATTTAGCTTTGGAGTATTAATTTTGGAAATAGTAAGTGGAAGAAAGAATAGAATGATTTCTCGTGAAAATGAAGATGCAAATCTTATTGCACAAGCTTGGATATTATGGAAAGAAAAGAAGGCTCTAGACTTCATTGATTCATGCATGGAGAATTCTTATGTTGAATTAGAAGCATTGCGTTGCATCCACATCGGTCTCCTATGTGTGCAACAAAATCCTGAGGATAGACCAAATATGTCAAATGTGGTTATGATGTTGGGTAGTGAGGTTGCCTTGCCCCAACCTAAGGAGCCTTCTTTCCTCACTGAGACTTCTCTTCTTCAAGCAGTTGATTCTTCGAGCTACCAACAATGTATTTCAACTAATGAAATAAGTGTCACAGTATTGGAAGCCCGATAA 2493 0.3959 MMNNLPFLFVITGMVLHFFFLRDVSSATDSISMVQPLHEGNTLVSSNGTFEMGFFSPGSSSNHYLGIWYKILPLKTVVWVANRSNPVKDNTSILHINNQGILQLVNKNGTVFWSTNSTTKMNLSNPIAQLLDSGNLVIRDENDQDSKNYYVWQSFDYPCDTLLPGMKLGWDLKTGLERRLTAWKNWDDPSPGNLSWGISLEGFPQGIFLKGSKEYYRVGPWIGLRFSGTPELKPNNLFSYKFVSNENEVYFVYKYNLEKKSLLLRLVMNETLGNRHGYMWNDGSSGWTEFSSHSPREACDLYNHCGPNAYCSIISGYSTCQCLKGFKQKSSQNWTEGCSSSLLDEQSRCNMDNKTGSQRDDKNGFSKVGGMKYPDTRRSWVNESMNLDECRDKCRENCSCMAYANSDIREGGSGCLMWFGVLDDIKEFSDGGADIYIRTIIDGKEGHKKKKVGLIVIGTSASVLVVVLIFGYIGQRIINCRVKKNNDAYEDYLDLPIFDLATIAKATEDFSISNKLGKGGFGTVYKGTLVDGQNIAVKRLLQGSNSGQGLTEFMNEVLLIAKLQHRNLVKLLGCCIQDGEKMLVYEYMPNKSLDNFIFGHKDGRVILDWPNRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDKELNPKISDFGMAKSFGGNQTEGNTSRIVGTYGYMAPEYAIYGLFSIKSDIFSFGVLILEIVSGRKNRMISRENEDANLIAQAWILWKEKKALDFIDSCMENSYVELEALRCIHIGLLCVQQNPEDRPNMSNVVMMLGSEVALPQPKEPSFLTETSLLQAVDSSSYQQCISTNEISVTVLEAR* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1334 830 CDD B_lectin 34 158 IPR001480 -
Amo18g1334 830 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 16 828 - -
Amo18g1334 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 189 IPR036426 -
Amo18g1334 830 Pfam S-locus glycoprotein domain 216 329 IPR000858 GO:0048544
Amo18g1334 830 SMART blect_4 34 158 IPR001480 -
Amo18g1334 830 CDD STKc_IRAK 516 784 - -
Amo18g1334 830 CDD PAN_AP_plant 357 439 - -
Amo18g1334 830 Pfam Domain of unknown function (DUF3403) 787 830 IPR021820 GO:0004674
Amo18g1334 830 PANTHER - 16 828 - -
Amo18g1334 830 PIRSF SRK 1 830 IPR024171 GO:0004674
Amo18g1334 830 SMART serkin_6 510 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1334 830 Pfam Protein tyrosine and serine/threonine kinase 512 783 IPR001245 GO:0004672|GO:0006468
Amo18g1334 830 Gene3D Hepatocyte Growth Factor 357 431 - -
Amo18g1334 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Amo18g1334 830 ProSiteProfiles PAN/Apple domain profile. 349 440 IPR003609 -
Amo18g1334 830 Gene3D - 22 155 IPR036426 -
Amo18g1334 830 Pfam D-mannose binding lectin 76 184 IPR001480 -
Amo18g1334 830 SMART ntp_6 360 439 IPR003609 -
Amo18g1334 830 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Amo18g1334 830 SUPERFAMILY Protein kinase-like (PK-like) 490 784 IPR011009 -
Amo18g1334 830 ProSiteProfiles Bulb-type lectin domain profile. 28 151 IPR001480 -
Amo18g1334 830 Gene3D Phosphorylase Kinase; domain 1 475 587 - -
Amo18g1334 830 Gene3D Transferase(Phosphotransferase) domain 1 588 793 - -
Amo18g1334 830 ProSiteProfiles Protein kinase domain profile. 510 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1334 830 Pfam PAN-like domain 361 424 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1334 Amo-Chr18 24310261 24314882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1334 452 812 Receptor kinase-like Gene Family AT4G23190 50.136 6.40e-118 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1334 PK_Tyr_Ser-Thr 9.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1334 - - qsu:112016032 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1334 18 24310261 24314882 Amo13g2213 13 37290879 37298627 PCT
Amo13g2213 13 37290879 37298627 Amo18g1334 18 24310261 24314882 PCT