Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1318 ATGGGAAACTTCATTATTACTATTATACCAATTATCAGTTTCTACCTTCTTCTCTTTCAAATCTTCCAAACAATTGCAGAAACTGATACCATCACTCACTTCCAGTCTCTAAGTAAAAACCAGACCTTAGTTTCCAAGACCGGACAATTTGAGCTTGGTTTCTTCACTCTTGATAATTCCACCAACCGTTATTACCTTGGCATATGGTACAAAAATATCCCAGGTCAAACCATTGTATGGGTCGCAAACCGCGAAAAACCCGCCACCAAACCCAACTCTCTTCTATTSATCATAAACAACACAACAGAGAACACACTACTCCTTAGTCAAGACAACAARACTGTTCTATGGTCTGTGAGCGTATCAASAKAACCCAAGAATCCAATCCTGCAGCTCTTGGATTCAGGGAACCTTGTTCTGACGGAAGAAAAGAATTATCTATGGCAAAGCTTTGATTACCCTGGTGATACACTCTTGCCAGGGATGAAGCTTGGTAAGGATTTGAAGACTGGTTTGGATAGGCGCGTAACTGCGTGGAAGAATAACAAAGATCCTTCGCCAGGAACGTTAAATTGGGGAATGGATGTGACTAAGTGGCCAGAACCAATGCAGAGAATAGGATCAATGAAACAGTTCAACTCTGGACCYTGGATTGGAGTGGGTTATGGTAGCAAACCAACCATAAAGCGCCAAGCATTTTTCAGCTTAGTTTTTGTCTCCAATGAGGATGAAGTCTACTTCGCATTCCACCTTGATAACAACTCAGTTCCCGTGAGGATGGTGTTGGATCAAGCCACCTACAAGCGTCTGTATTTTGTTTGGATTGATTCTGACCAACAATGGCAGGTCTATGTTTCCCTGCCAAGAGACTCTTGCGAGCGATATAGTGTTTGTGGTCCTAATTCCAATTGTGATTGGAACACGTCCGCAGTTGATGCTTGTGCTTGTTTGAGAGGGTTCAGGCCTAACAGCGCAGGAGGTTGCTTGCGCGACAAGCTGCTACAATGTGAAAGTGATGAGTTTGTTAAGTATGAGAAGATGAAAGTGCCGGACACTGAGAATTGTTGGTACTTGAATCAGAGCATGAACCTTGTTGACTGCAGAGACAAATGCTTGAGGAATTGTTCCTGTGTTGCTTATGCGAATTCGGATATTAGAGGTGAAGGTAGTGGTTGTGCTTTGTGGTTTGGTGATCTTAATGACTTGAGGATTCTACCAGATGCAGGCCAAGATCTTTATATTAGAGTTCCTGCTTCAGAGTTAGAGACAAACAACGGACGCAAGGTCAAAATAGGAGTTGCAGTTGGAGTCACAATTGGCGTATTATGTGGCCTTCTCTTAGTTTTGTGTTTGATATGGAAAAGAAGGAAAAGGGCCATTCTGAAAGATAATGTAGAGGCTATTGTAGCATTCGTGGATCATTCCGAGGAAGACACAGAGGTTCAATTCTATGACCTATCAGTTATAGCTTCTTCCACAGATAACTTTTCTGATAAAAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTCTTCATGGGAACATTGGAAAATGGACAAAGAATAGCAGTTAAGAGGCTTTCAACTGGTTCTGGACAAGGGGCCGAGGAATTTAAGAATGAAATTGCATTGATTGCTAAACTTCAGCATCGTAATCTTGTCAAACTAAAAGGATATTGCATTCAGAATGAAGAGAAATTACTTATATATGAATACATGCCTAATAAGAGTTTGGATTTCTTTATATTTGATCAAACACAAAGAATGCTTTTGGATTGGCCTACAAGATTCGATATAATATGTGGGATAGCGAGAGGCCTTCTTTATCTTCACCAAGATTCAAGACTTAGAATTATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGACGATAAGATGAATCCAAAGATCTCAGATTTCGGTTTAGCTAGAATCTTGGGAGAAGACAAGACTGCAGAAATTACGCATCGCATTGTTGGAACATATGGATATATAGCACCGGAATATGCAATTGATGGAAACTGCTCAGTAAAATCAGACGTTTATAGCTTCGGTGTTCTCTTGTTGGAGATAGTATCAGGAAAGAAAAACACAGGAGGCCATGAAAAAGAAAATACAAACCTTACTGGATACGCATGGAATTTGTGGATGGAAGGGAGGCCTTTAGACTTGATTAGTGAAGACCTAAAAGAATCTTGCAATGGCTCTGAAGCATTGCGATGCATTCAAATTAGTTTTCTGTGTCTCCAACAGAATCCACATGAGAGACCAAGCATGTCATCTGTGGTTATGATGTTAGGTAGTGAAATTTGCTTGCCTCAGCCAAAACAACCAGCTCTTTTTGTTCGAGAATATTCTTCACCAAATAAGAGTAATTTATTTTCTACTAATGAATTAAGTATGTCCATTTTAGAACCACGTTAG 2424 0.401 MGNFIITIIPIISFYLLLFQIFQTIAETDTITHFQSLSKNQTLVSKTGQFELGFFTLDNSTNRYYLGIWYKNIPGQTIVWVANREKPATKPNSLLXIINNTTENTLLLSQDNKTVLWSVSVSXXPKNPILQLLDSGNLVLTEEKNYLWQSFDYPGDTLLPGMKLGKDLKTGLDRRVTAWKNNKDPSPGTLNWGMDVTKWPEPMQRIGSMKQFNSGPWIGVGYGSKPTIKRQAFFSLVFVSNEDEVYFAFHLDNNSVPVRMVLDQATYKRLYFVWIDSDQQWQVYVSLPRDSCERYSVCGPNSNCDWNTSAVDACACLRGFRPNSAGGCLRDKLLQCESDEFVKYEKMKVPDTENCWYLNQSMNLVDCRDKCLRNCSCVAYANSDIRGEGSGCALWFGDLNDLRILPDAGQDLYIRVPASELETNNGRKVKIGVAVGVTIGVLCGLLLVLCLIWKRRKRAILKDNVEAIVAFVDHSEEDTEVQFYDLSVIASSTDNFSDKNKLGEGGFGPVFMGTLENGQRIAVKRLSTGSGQGAEEFKNEIALIAKLQHRNLVKLKGYCIQNEEKLLIYEYMPNKSLDFFIFDQTQRMLLDWPTRFDIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDDKMNPKISDFGLARILGEDKTAEITHRIVGTYGYIAPEYAIDGNCSVKSDVYSFGVLLLEIVSGKKNTGGHEKENTNLTGYAWNLWMEGRPLDLISEDLKESCNGSEALRCIQISFLCLQQNPHERPSMSSVVMMLGSEICLPQPKQPALFVREYSSPNKSNLFSTNELSMSILEPR* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1318 807 SMART blect_4 34 154 IPR001480 -
Amo18g1318 807 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544
Amo18g1318 807 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 804 - -
Amo18g1318 807 Pfam D-mannose binding lectin 77 180 IPR001480 -
Amo18g1318 807 PIRSF SRK 2 807 IPR024171 GO:0004674
Amo18g1318 807 ProSiteProfiles PAN/Apple domain profile. 336 417 IPR003609 -
Amo18g1318 807 SMART ntp_6 336 416 IPR003609 -
Amo18g1318 807 Gene3D Transferase(Phosphotransferase) domain 1 572 772 - -
Amo18g1318 807 CDD PAN_AP_plant 334 417 - -
Amo18g1318 807 PANTHER - 29 804 - -
Amo18g1318 807 CDD STKc_IRAK 502 766 - -
Amo18g1318 807 CDD B_lectin 35 154 IPR001480 -
Amo18g1318 807 Pfam PAN-like domain 336 402 IPR003609 -
Amo18g1318 807 SMART serkin_6 496 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1318 807 ProSiteProfiles Bulb-type lectin domain profile. 28 153 IPR001480 -
Amo18g1318 807 ProSiteProfiles Protein kinase domain profile. 496 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1318 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Amo18g1318 807 Gene3D - 23 151 IPR036426 -
Amo18g1318 807 Gene3D Phosphorylase Kinase; domain 1 470 571 - -
Amo18g1318 807 Pfam Protein tyrosine and serine/threonine kinase 499 765 IPR001245 GO:0004672|GO:0006468
Amo18g1318 807 SUPERFAMILY Protein kinase-like (PK-like) 478 797 IPR011009 -
Amo18g1318 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 185 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1318 Amo-Chr18 23639585 23642852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1318 414 807 Receptor kinase-like Gene Family AT4G05200 48.175 2.73e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1318 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1318 - - ahf:112769120 1154.81