Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1307 CTTCCTTCAAAACAAAATCCAAGTGAAAGGCTAGTTTCCCAAGTAACTTGTGGGTTATTAGCATTGCTCTTAACCATAAGGTCCTTGGATCGAAACTGGCACACAGAGGAAGCAAAAAAAAATCCAAGTGAAAGTGTGAAACTAGCACTTGCTAGCAATGCGGAGAGAACTAGCGGACTTCCCTCCACCTTGAGTTCCAATCCATGTCCTCATCCTGCGGCCTGGAATTGGAACTCATCACAACAACGAAAAAATAAAAAGCAGATGATGGAAGTGGTTCTGAGTTTGATGCTAATTAGCAGTGCTCATTTTCTATTAACTGAAGAGAGCCAAAACGACAGCGTATCATCCTCTTCTGGAGGGAACGAAAGCTACTGCGACTTCCCTGGAATTTGCGGACCCAATGGGAACTGCGATGTTAATAAGCCGCTAGCTTGTGGATGCTTGGATGGTTTCACACCCAAGTCTCCCACTGCCTTCGATAGCCTCGACTACACGCACGGCTGCGTCAGAAAGAAACCACTCAATTGTAGCACCGACGTGTTCGTTGCCTATGCTGTGTTCCAAGAACCCACTGGCACGTCTTATTATCATTCTTTCTTCAACCAAAGTTCGGAAGCCGAGGGTTGCAAGGAGAAATGCAAGAGTAATTGTTCTTGCATGGCGGCTTATACAGAAATTGGGAGTGGTGAATGCAAATTGTGGAGTGGTGATCTGTTTGATGTTAGGGTCATACAGGAAGGACGCCAATATCTTTATATACGAATGCCTGCTTTAGACCATGCAGAGCCCGGAGGCCGAAGTCACCGGCGCAGCGACCATAAGGTGGTGGGAGTAGTTGTTGGCAGCGCCGCTGTTGTGATTTTGGGTATGATCTTGGCTTCTTGGTACATGCTCTCCAAAAGAACAGACCCACAAGCATTGGGAGATGTAAGGATTGGTGAGATGCTTAGTCATGCCAATGAACAAGAAGGGGATCTGGAGCTTCCATTACTTGACCTATCAAGAATAGCTATGGCTACTGATAACTTTTCTCTCAATAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGCGTATTAGATGATGGACAACAAATTGCTGTAAAGAGACTTTCAAGTAGTTCTGGACAGGGTTTAAATGAATTTAAAACTGAGGTCAAACTAATAGCCAAACTTCGACACCGTAATCTTGTAAAACTTCTTGGTTGTTGCATTCATGAGGAAGAGAAATTGTTGGTATATGAATACATGCCTAACAGAAGTTTAGACTATTTTATTTTTGATCAAATGCGAAAGAAGACTTTGGATTGGCCTAAGCGCTTTAACATCATTTGTGGAATTGCTAGGGGCTTATTATATCTTCATCAAGATTCAAGACTAAGGATTATACATAGAGATCTTAAAGCATGGGATCTATGGAAACAAGGAAGGTCATTAGAATTGGTGGATGAATGGTTGAAGGAGACATGGAATGTGTCTGAAGTGCAACGTTGCATCCACATCAGCCTCCTATGTGCACAACAGCATCCCCAAGATAGGCCAACCATGTCATCAGTGGTTCTCATGCTTGGAACTGAAATTGATTTACCTCAACCCAAATATCCTACGTTTTTTGTTGCTGAATCTTCTGAAGGCACAAGTTCCTCCTCTTGTAAAAACGAATTGAGCGTTACAGAATTGGAACCTCGATAA 1701 0.4321 LPSKQNPSERLVSQVTCGLLALLLTIRSLDRNWHTEEAKKNPSESVKLALASNAERTSGLPSTLSSNPCPHPAAWNWNSSQQRKNKKQMMEVVLSLMLISSAHFLLTEESQNDSVSSSSGGNESYCDFPGICGPNGNCDVNKPLACGCLDGFTPKSPTAFDSLDYTHGCVRKKPLNCSTDVFVAYAVFQEPTGTSYYHSFFNQSSEAEGCKEKCKSNCSCMAAYTEIGSGECKLWSGDLFDVRVIQEGRQYLYIRMPALDHAEPGGRSHRRSDHKVVGVVVGSAAVVILGMILASWYMLSKRTDPQALGDVRIGEMLSHANEQEGDLELPLLDLSRIAMATDNFSLNNKLGEGGFGPVYKGVLDDGQQIAVKRLSSSSGQGLNEFKTEVKLIAKLRHRNLVKLLGCCIHEEEKLLVYEYMPNRSLDYFIFDQMRKKTLDWPKRFNIICGIARGLLYLHQDSRLRIIHRDLKAWDLWKQGRSLELVDEWLKETWNVSEVQRCIHISLLCAQQHPQDRPTMSSVVLMLGTEIDLPQPKYPTFFVAESSEGTSSSSCKNELSVTELEPR* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1307 566 MobiDBLite consensus disorder prediction 546 566 - -
Amo18g1307 566 Pfam S-locus glycoprotein domain 114 156 IPR000858 GO:0048544
Amo18g1307 566 CDD PAN_AP_plant 174 257 - -
Amo18g1307 566 PANTHER - 84 472 - -
Amo18g1307 566 PANTHER - 471 555 - -
Amo18g1307 566 Pfam PAN-like domain 177 242 IPR003609 -
Amo18g1307 566 Pfam Protein tyrosine and serine/threonine kinase 345 472 IPR001245 GO:0004672|GO:0006468
Amo18g1307 566 Gene3D Phosphorylase Kinase; domain 1 312 419 - -
Amo18g1307 566 ProSiteProfiles Protein kinase domain profile. 344 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1307 566 Gene3D Transferase(Phosphotransferase) domain 1 474 539 - -
Amo18g1307 566 ProSiteProfiles PAN/Apple domain profile. 177 258 IPR003609 -
Amo18g1307 566 SUPERFAMILY Protein kinase-like (PK-like) 335 536 IPR011009 -
Amo18g1307 566 SMART ntp_6 177 256 IPR003609 -
Amo18g1307 566 Gene3D Transferase(Phosphotransferase) domain 1 420 473 - -
Amo18g1307 566 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 84 472 - -
Amo18g1307 566 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 471 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1307 Amo-Chr18 23395089 23398420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1307 320 475 Receptor kinase-like Gene Family AT4G23130 61.006 6.13e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1307 PK_Tyr_Ser-Thr 4.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1307 - - adu:107462470 763.837