Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1305 ATGGAGAACAGAAACTTTGCCATTATAATAGCAATGATCATGTTCTTAGTCTCCAACACCATTTCAGCAACTGATACCATAACTCACTTACATCCTCTAACTGAAAATCAAACCTTGGTTTCCAAGAACGGAGAATTCGAGCTTGGCTTCTTTTCTCCCCGCAACTCTGATAACCGCTACCTTGGCATTTGGTACAAGAAGATCGCCATTCAAACCATTGTATGGGTAGCAAACAGAGAAGAACCTGTCGCAACACACATCTCTGCATTGCTGACAATAAACATCACCCAGAATAGCAGCGCACTACTTGTCCTCCATCAGAATAACTCAGTTCTATGGTCCGTGAGCGTATCAAGAAAACCCAAGAATCCAATTTTACAGCTATTGGATTCAGGGAACCTTGTTCTGAGAGAAGAAAATGATGAGAATGAAGAGAAGAACTATCTATGGCAAAGCTTTGATTACCCTGGTGATACACTCTTGCCAGAGATGAAGCTTGGTAAGGATTTGAAGACCGGGCTCGATCGACGCTTATCGGCGTGGAAGAATGAAAGTGATCCTTCACCGGGAAGCTTCACATGGGAAATGGATGTCACCAACTGGCCAGAACCAATGCAGAGAATCGGTTCCAAGAAACAGTTCAACAGTGGTCCATGGACAGGACTTGATTATAGTGGTAAACCAACGAGGAAGCCCAGCATGGTTTTCAACTTCACATACTTCTCTGACCAGAATGAAGTGTACTTCATGTTCCACCTTGTGAATACCTCGGTCAAAGCTAGGATGGTCATGAACCAGAGCACCTTGAAGCGTGTTCATACTGCTTGGGATCAGAATGAGCAACAGTGGAAGGTGTATGCTCTTCTGCCCAGAGATTTCTGCGATGAATACGGTTCTTGCGGCCCCAATGGGAATTGTGATGGTAACAAGGTTCCAGCTTGCCAATGTTTGAGAGGATTTAAGCCCAAGTCACCCCGTCAATGGAATGGTGGGAAGTACGATGAAGGTTGTGTGCGTGACACACCACTGGATTGCAAAAGTGATGGATTTGTTAAGTATGTTAAGATGAAAATGCCTGATACAGAACATAGTTGGTTGAACCAGAGCATGAATCTTGTTGAATGCAGAGAGAAATGCTTCAGAAACTGTTCTTGTATGGCTTATTCAAACTCAGACACCAGAGGATCAGGGAGTGGTTGTGCTATGTGGTTTGGTGATCTTAATGACTTGAGGGTTCACCTAGCTGATGCAGAACACGATCTATATGTCAGAGTTCCTGCTTCGGTGTTAGAGACAAACAACGGAAGCAAGGTCAAGATTGGTGTTGCAATTGGAGGCACTGTTGCCTTATTATGTGTACTTCTCTTAGTTCTTTATTTCATATACATAAGACGAAGTGGCACAATGAAAAGTAATGCCGCAGTAGTAGATCATTTCAAGGAAGAACAGGAAGAGGATTTGGAGCTTCCATTGTTTGACCTATCAGTTATAGTTAGCGCCACAAACAACTTTTCAATCGACAACAAGCTCGGAGAAGGTGGTTTTGGACCTGTGTATAAGGGGACAATGGAAAATGGACAAGAAATTGCTGTTAAGAGACTTTCTAGAAGTTCTGGCCAAGGACTTAAAGAATTTAAGAATGAAATTGTCTTAATAGCCAAACTTCAGCATCGTAATCTTGTAAAGCTTCATGGGTGTTGCATTCATGAGGAAGAAAAATTGCTTGTCTATGAGTACATGCCTAATAAAAGTCTGGATTTATTTATATTTGATYAAACGCAAAGAATGCTCTTGGATTGGTCGAAGCGCTTTCAAATAATTTGTGGAATTGCAAGGGGAATTCTTTATCTTCATCAAGATTCAATACTAAAAATCATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAGTGATATGAATCCTAAAATATCAGACTTTGGTTTGGCCAAAATTTTTAAAGGAGATCAAAGTGCAGAAACTACAGGTCGAGTGGTTGGAACCTATGGATACATGGCACCAGAATATGCAATAGACGGAAATTTTTCAGTGAAATCTGATGTCTTRAGCTTTGGCATTTTGCTGCTGGAGATAGTATCCGGAAAGAAGAACAAAGCAAACCATCATGATAAKGAAAGTACATACCTTGCTTGGGATTTATGGACAGAAGAAAGGCATATAGAAGTAGTTGATGAATACCTCAAAGGTGATCTCTCTGAAGCGTTGCGCTGCATTCATATAAGTCTCCTCTGTGTGCAGCAGAATGCACATGATAGGCCAAACATGTCATCAGTGGTTATGATGTTAAGCAGTGAAATTAGCTTGCCTCAGCCAAATCCACCAGCTCTGTTTCTTGGAGATCATTCGGATCAACAACATCCTTCATCTCTCAATGAATTAAGTATTACAACTTTAGAAGCTCGTTAG 2430 0.4111 MENRNFAIIIAMIMFLVSNTISATDTITHLHPLTENQTLVSKNGEFELGFFSPRNSDNRYLGIWYKKIAIQTIVWVANREEPVATHISALLTINITQNSSALLVLHQNNSVLWSVSVSRKPKNPILQLLDSGNLVLREENDENEEKNYLWQSFDYPGDTLLPEMKLGKDLKTGLDRRLSAWKNESDPSPGSFTWEMDVTNWPEPMQRIGSKKQFNSGPWTGLDYSGKPTRKPSMVFNFTYFSDQNEVYFMFHLVNTSVKARMVMNQSTLKRVHTAWDQNEQQWKVYALLPRDFCDEYGSCGPNGNCDGNKVPACQCLRGFKPKSPRQWNGGKYDEGCVRDTPLDCKSDGFVKYVKMKMPDTEHSWLNQSMNLVECREKCFRNCSCMAYSNSDTRGSGSGCAMWFGDLNDLRVHLADAEHDLYVRVPASVLETNNGSKVKIGVAIGGTVALLCVLLLVLYFIYIRRSGTMKSNAAVVDHFKEEQEEDLELPLFDLSVIVSATNNFSIDNKLGEGGFGPVYKGTMENGQEIAVKRLSRSSGQGLKEFKNEIVLIAKLQHRNLVKLHGCCIHEEEKLLVYEYMPNKSLDLFIFDXTQRMLLDWSKRFQIICGIARGILYLHQDSILKIIHRDLKASNVLLDSDMNPKISDFGLAKIFKGDQSAETTGRVVGTYGYMAPEYAIDGNFSVKSDVLSFGILLLEIVSGKKNKANHHDXESTYLAWDLWTEERHIEVVDEYLKGDLSEALRCIHISLLCVQQNAHDRPNMSSVVMMLSSEISLPQPNPPALFLGDHSDQQHPSSLNELSITTLEAR* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1305 809 ProSiteProfiles Bulb-type lectin domain profile. 24 149 IPR001480 -
Amo18g1305 809 SMART blect_4 30 156 IPR001480 -
Amo18g1305 809 SMART serkin_6 504 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1305 809 CDD PAN_AP_plant 341 426 - -
Amo18g1305 809 Pfam Protein tyrosine and serine/threonine kinase 505 769 IPR001245 GO:0004672|GO:0006468
Amo18g1305 809 PANTHER - 26 802 - -
Amo18g1305 809 SUPERFAMILY Protein kinase-like (PK-like) 489 783 IPR011009 -
Amo18g1305 809 PIRSF SRK 3 809 IPR024171 GO:0004674
Amo18g1305 809 Pfam D-mannose binding lectin 72 182 IPR001480 -
Amo18g1305 809 SMART ntp_6 345 425 IPR003609 -
Amo18g1305 809 Pfam S-locus glycoprotein domain 214 324 IPR000858 GO:0048544
Amo18g1305 809 CDD STKc_IRAK 510 770 - -
Amo18g1305 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Amo18g1305 809 Gene3D Transferase(Phosphotransferase) domain 1 580 777 - -
Amo18g1305 809 CDD B_lectin 32 156 IPR001480 -
Amo18g1305 809 ProSiteProfiles Protein kinase domain profile. 504 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1305 809 MobiDBLite consensus disorder prediction 781 802 - -
Amo18g1305 809 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 802 - -
Amo18g1305 809 Pfam PAN-like domain 345 410 IPR003609 -
Amo18g1305 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 187 IPR036426 -
Amo18g1305 809 Gene3D Phosphorylase Kinase; domain 1 466 579 - -
Amo18g1305 809 ProSiteProfiles PAN/Apple domain profile. 345 426 IPR003609 -
Amo18g1305 809 Gene3D - 18 153 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1305 Amo-Chr18 23349918 23353176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1305 442 784 Receptor kinase-like Gene Family AT4G23230 55.301 2.42e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g1305 PK_Tyr_Ser-Thr 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1305 - - adu:107462330 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1305 18 23349918 23353176 Amo18g1305 18 23349918 23353176 ECH