Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1302 ATGAGACAAGCAGGTGCATATTCCGGGATACTATGTGGGGGCATTTCTGGAAGAACAGGGCCACACTCTTTGCCATTGGCAAGGATCAAGAAGATCATGAAGAAATCTGGTGAAGATGTTAAGATGATTTCTGGTGAGGCACCTATTGTTTTCTCAAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCTTGGATCGTCGCCATCCATGGAAAGAGGAGAACCTTGCATAAAGATGACGTGGCATCTGCCGTCGTCGCCACTGATATCTTTGACTTTTTGGTCACTTTGGTGTCTCATAATCATGGAAGCGCTTTGAATAATGCCAATAATGATGGTGCTGTTATGGAAATTCAGACATTAGAGTATTCTTAA 381 0.4304 MRQAGAYSGILCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWIVAIHGKRRTLHKDDVASAVVATDIFDFLVTLVSHNHGSALNNANNDGAVMEIQTLEYS* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1302 126 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 111 - -
Amo18g1302 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Amo18g1302 126 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Amo18g1302 126 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 111 - -
Amo18g1302 126 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1302 Amo-Chr18 23319242 23319622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1302 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.265 3.20e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo18g1302 CBFD_NFYB_HMF 9.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1302 - - adu:107462326 244.202