Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1299 ATGGCAGAAGATCAATTTCAGGCAAGTGGAAACTGGTGGGAGAATCCAGCTATRAGGAACAATTGGCAACCGCATCASCAACAACAAGATGAATCAGATCACATGATGAAACCYACAAGGGTTTCRATGGATTCCTCGGGTGGTGGCGSTGCCGGTGGCGGTTCGTCTTCTGTGGTGTTRCATGACCCACAGAAGCTTCAGCCTCCGGATTCRGCCYCGGCCGCCACTTCTTCCACTGACCCCAACTTGCACTTTATGGCTTTAGGCCTCTCTTCCCCGCCCATCGATTGGAATCAACAACCATCCTTCTTGCGTGGTGAGAAGGGTGGAGAGAACAGCTTCAGGTCGATGCTACAAGAAGAGGGTGGAGGCGGCGGCGGCATGGGGTTGTCAGCACAACAAGTCCATCAATGGAGATCAGCGGAAAGCGAATTCAAGAACAATAGAGGTTTCTGTTTGGAGCAAAACCAATTCAGTCCTCAATATAGCTCCGGTGACAGCACAGTAACAAGCCAACAAGGATTTCATCACCAAAACATGGATCATTCCGCAGTTCTATACGGTAGCCCTTCATCAATCTTACAAGGACTATTAGGACCTGATCATCATCACCATCATCATCAACAACAAGCTAATCATAATTTTTCATATCCAACTTCAAACTATGGGTTGAGTTCTTCTAGTAGCAATGACTTTGTGCCTTCTTCTTCTTCTTCTAATTGGTCTAATAACAACAATAATAATAATAATAACAATAAAGTGCCTCAGTTCTTGAGAGGCTCACCACCAAAACAGTTATCGAATTCGTCATCATCACCGATAACAACAACAAACACTAGTTTGCATTTCACAAACAACGCTCCTTTTTGGAACGCTGCTGCTGCTGCTGCTTCTGACCCGAAAGATGTTAGGTCCACCACCTTCTTCCCTAATTCATTGCAGCCACCATTCTTCACTAATCCAAGTTTTGATGTCCAATCTAAGAATATGAGTGAAATGAGGGATTCAGGTGCAGTGGTGAAGAAAAGTGGGAGTGAACCAACACCCAAAAGGCCTCGGAACGAAACTACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTAGTGTCGCCTTTTGGAAAGACTGATACAGCCTCAGTGTTATCTGAAGCAATTGAATACATCAAATTCCTCCATGAACAGGTTTTGAGTACCCCGTATATGAAAAGTGGAGCTCCTATACAGATTCAACAGGGTTCCGGTAAATCTAAGGAAGGTGAGGGTCCAAAACAAGATCTTAGAAGCCGAGGGCTATGCTTGGTGCCAGTTTCAAGCACATTTCCAATGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTTGGAGGAGGTTCAAGATAG 1422 0.4466 MAEDQFQASGNWWENPAXRNNWQPHXQQQDESDHMMKPTRVSMDSSGGGXAGGGSSSVVLHDPQKLQPPDSAXAATSSTDPNLHFMALGLSSPPIDWNQQPSFLRGEKGGENSFRSMLQEEGGGGGGMGLSAQQVHQWRSAESEFKNNRGFCLEQNQFSPQYSSGDSTVTSQQGFHHQNMDHSAVLYGSPSSILQGLLGPDHHHHHHQQQANHNFSYPTSNYGLSSSSSNDFVPSSSSSNWSNNNNNNNNNNKVPQFLRGSPPKQLSNSSSSPITTTNTSLHFTNNAPFWNAAAAAASDPKDVRSTTFFPNSLQPPFFTNPSFDVQSKNMSEMRDSGAVVKKSGSEPTPKRPRNETTPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVLSTPYMKSGAPIQIQQGSGKSKEGEGPKQDLRSRGLCLVPVSSTFPMTHETTVDFWTPTFGGGSR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1299 473 MobiDBLite consensus disorder prediction 419 443 - -
Amo18g1299 473 MobiDBLite consensus disorder prediction 70 85 - -
Amo18g1299 473 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 461 - -
Amo18g1299 473 Gene3D - 365 411 IPR036638 GO:0046983
Amo18g1299 473 CDD bHLH_AtbHLH_like 361 408 IPR045239 -
Amo18g1299 473 MobiDBLite consensus disorder prediction 162 283 - -
Amo18g1299 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Amo18g1299 473 MobiDBLite consensus disorder prediction 1 87 - -
Amo18g1299 473 MobiDBLite consensus disorder prediction 162 190 - -
Amo18g1299 473 MobiDBLite consensus disorder prediction 320 361 - -
Amo18g1299 473 SMART finulus 366 410 IPR011598 GO:0046983
Amo18g1299 473 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 51 461 - -
Amo18g1299 473 MobiDBLite consensus disorder prediction 211 283 - -
Amo18g1299 473 MobiDBLite consensus disorder prediction 1 29 - -
Amo18g1299 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 365 411 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1299 Amo-Chr18 23279994 23284779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1299 105 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.765 4.91e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1299 - - ahf:112772433 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1299 18 23279994 23284779 Amo18g1299 18 23279994 23284779 ECH
Amo18g1299 18 23279994 23284779 Amo08g1447 08 23713227 23717718 hybridization