Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1285 ATGGCTTTGAGGGCGGCAGCGGCTATAGCTGCAGCGCAACCTTCGTCGCGCGGTTTATTGCGGCTGCTTTCGAGCCGTTCTGCTTATCCGCCGTCGACTACTGCCGCAGTGTTTGCTCGACAGGCGGTGGAGCCCAAATCCTCCGTCTTCGTTTCCGGGCTTAACAAACGGACGACATCCGAACGCCTACTCCAAGAATTTTCTAAGTTTGGTGAAGTTGTTCGCACTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGGGTACGGTTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAACATGAATGGAAAGAGTATGCCAAATCTATCCCAGAACCTAGACAGCAATGTCCCCGGCATCTCCGGCAGTAGAGGTCCGTAA 399 0.5163 MALRAAAAIAAAQPSSRGLLRLLSSRSAYPPSTTAAVFARQAVEPKSSVFVSGLNKRTTSERLLQEFSKFGEVVRTRVMIDRTGCSKGYGFVQYATIEEAAKGIENMNGKSMPNLSQNLDSNVPGISGSRGP* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1285 132 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 119 IPR000504 GO:0003723
Amo18g1285 132 Gene3D - 22 120 IPR012677 -
Amo18g1285 132 PANTHER TRANSFORMER-2-RELATED 1 111 - -
Amo18g1285 132 SMART rrm1_1 48 122 IPR000504 GO:0003723
Amo18g1285 132 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 111 - -
Amo18g1285 132 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 114 IPR000504 GO:0003723
Amo18g1285 132 SUPERFAMILY RNA-binding domain, RBD 40 112 IPR035979 GO:0003676
Amo18g1285 132 CDD RRM_SF 49 112 - -
Amo18g1285 132 MobiDBLite consensus disorder prediction 108 132 - -
Amo18g1285 132 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1285 Amo-Chr18 22940800 22942843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1285 47 114 Eukaryotic Initiation Factors Gene Family AT4G34110 33.824 4.43e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1285 - - adu:107488830 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1285 18 22940800 22942843 Amo18g1285 18 22940800 22942843 ECH