Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1245 ATGGATTTCAATGGGATGTTTGGAGCCGAAGTGGAACAGTCAGATGAGAACAGCTCGGATGGATATTGTGGCCATTATTATGCGAGTGACGACGAAGGTGACGAGGACGAAGGTGGTAAGGACTGCGGTGGTCAGGAAGGTGACCCAACAGGGCGCAGAGAAGATGAACATGGTAATTTCTCAGGTGGTGCTAGTCATGCAGGGGATGGTGGCAAAATTTGGCTGGTTATGGCAGAGGATTTCCTAGGCAGAGAGTTTGTTGGGGAGGAGGATGCCTACCTTGCGTACAAGGAGTTTGCTAAGACGAGGGGTTTCGGGATCCGCAAGGGAGATGTGGAGGCACATTCTAAGCACTATGACCGTCCTGAGCGAGTTAGGGAGGAGAGGTTGGAGAGTCGAACCGACTGCAAGGCGAAGTTGAAGATTTACTATGATGTGCAACGCAGTGTGTGGAAGGTCAGGACCATCTTCGATGAGCACAGCCACAAGCTTGCTCCGGCCATGTTTTCCCACCTCTTGCCTAGCCATCGCAAGATGAATTGCGTTGTAAAGGATTATCAAAACAACGAAGTCACGGCGCAGTTCTATTCTACGTATTATAGCCCCGTGTTAACAACCGGGCTTGACTCCATTGAGCTTTTTGCATCAAAACTGTACACGCGGGAAGTTTTTAGAGAGGTGAAGAAACAAATCAAGGGTGTTGCGACCTTGTTGTTTCGTGGGAGAGATAGCATCAACACAACGGTTGTCTACAAGTTTTCAAGGATGGGTGCCCCTGGTAGGATTCACAAGGTTTTGTTCCACCCCGATGACAAGAAAATTCAGTGCGACTGTTCGATGTGGAATAGCGAGAGTATTCCATGTAGTCACATTTTCTGCGTGATGAAATACGAGGGTTTGGATCAAATACCGGACAGTCTTATAATGAGAAGATGGTGCAAGGATGCAAAGGATTCCAGCCGGACACCGGTGACTACGAGACCTGGACATGAGGGTCGCATGCTTAGGTATGCCGCACTTTGTTTGGCCACAAGCTTGGTCGCAAGACTTGGTTCGGAGGAGGGCGAAGACTTTGAATTCGCTAGGGAGAGCATCGTGAGTGTAATAGAAAAGCTACGTCACAAAATTTATGAGAGGGCAGGCAGTCAGCCACGTATGTCGGCATGGAGCCCGATGAAGGACCCGGTGGTCTCAAGAACAAAAGGGGCCCCTAAGAGGACGAAGGAGTTCGACCCAAGCAGACAAACGGATTTCCGAGGGAAGAGACATTGTTACACCAAATGTGGCATTCCAAGGCATACAAAGAGGACATGCAGTGGGGACTGTGCACGAGGTGTGTCCGGGGTAGGTAACGGGGTCTCGTCAACGTTTGGCAAAGGTTCGCATCACGGCCCTTTAGCATCGCCAGCGTCGCTTCCGACAGAGCGCGGTTATGCGTATGAGGTAATCTTGGCAAAGGTTGCATTTATGTGA 1473 0.501 MDFNGMFGAEVEQSDENSSDGYCGHYYASDDEGDEDEGGKDCGGQEGDPTGRREDEHGNFSGGASHAGDGGKIWLVMAEDFLGREFVGEEDAYLAYKEFAKTRGFGIRKGDVEAHSKHYDRPERVREERLESRTDCKAKLKIYYDVQRSVWKVRTIFDEHSHKLAPAMFSHLLPSHRKMNCVVKDYQNNEVTAQFYSTYYSPVLTTGLDSIELFASKLYTREVFREVKKQIKGVATLLFRGRDSINTTVVYKFSRMGAPGRIHKVLFHPDDKKIQCDCSMWNSESIPCSHIFCVMKYEGLDQIPDSLIMRRWCKDAKDSSRTPVTTRPGHEGRMLRYAALCLATSLVARLGSEEGEDFEFARESIVSVIEKLRHKIYERAGSQPRMSAWSPMKDPVVSRTKGAPKRTKEFDPSRQTDFRGKRHCYTKCGIPRHTKRTCSGDCARGVSGVGNGVSSTFGKGSHHGPLASPASLPTERGYAYEVILAKVAFM* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1245 490 ProSiteProfiles Zinc finger SWIM-type profile. 263 299 IPR007527 GO:0008270
Amo18g1245 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 178 379 IPR031052 GO:0006355
Amo18g1245 490 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 120 171 - -
Amo18g1245 490 MobiDBLite consensus disorder prediction 385 416 - -
Amo18g1245 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 120 171 IPR031052 GO:0006355
Amo18g1245 490 MobiDBLite consensus disorder prediction 1 65 - -
Amo18g1245 490 SMART 26again6 274 301 IPR006564 GO:0008270
Amo18g1245 490 MobiDBLite consensus disorder prediction 40 60 - -
Amo18g1245 490 MobiDBLite consensus disorder prediction 399 416 - -
Amo18g1245 490 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 178 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1245 Amo-Chr18 22056829 22059257 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g1245 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1245 - - aip:110265240 615.535