Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1238 ATGAAAGAGGAATCAACAGGACTAATCATTGGGATCTCCATAGGTGTAGTTATTGGAGTTGTTCTTGCAATTTCTGCACTTTTCTGCTTTAGATACCATAGGAAGCGTTCACAGATTGGGAACAGCAGTTCCAGGAGGGCAGCCACCATACCAATTCGCGCAAATGGTGCCGATTCGTGTACTATTCTCTCTGACTCAACCTTAGGTCCAGAATCACCTGTGAAGGCCGCGTCGCGAAACGGGGGCATGTCCTTCTGGCTTGATGGATTTAAGAAGAGTAGCATGGTTTCAGCATCTGGTATACCAGAATATTCTTACAAGGATTTGCAGAAAGCAACCTATAATTTTACAACACTCATAGGACAAGGTGCCTTTGGTCCTGTTTATAAAGCTCAGATGTGTACTGCGGAGACTGTTGCGGTTAAAGTTCTTGCAACAAATTCCAAGCAAGGGGAAAAAGAATTTCACACTGAGGTTATGTTGTTGGGAAGGTTGCATCATAGAAACCTGGTCAATTTGGTTGGATATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTTTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTACAGCGAAGAGAATGGGACGCTGGGTTGGGATTTGAGGGTGCACATAGCTTTAGATGTAGCAAGAGGCTTGGAATATCTTCATGATGGAGCAGTTCCTCCTGTAATCCATAGAGATATCAAGTCTAACAATATTCTCTTGGACCAGTCGATGCGAGCCAGGGTATGTTGCTGTTTTGGACTTTCAAGAGAAGAGGTGGTAGATAAACAGGCAGCAATTCGCGGAACCTTTGGATACCTTGATCCTGAGTATATATCTTCGGGAACATTCACTAAGAAGAGTGATGTTTATAGTTTCGGTGTGTTGCTCTTTGAACTTATAGCTGGAAGAAATCCACAGCAAGGTCTAATGGAATATGTTGAACTTGCGGCAATGAACACGGATGGAAAAGTTGGTTGGGAGGAGATTGTTGATTCTAGGCTAGAGGGTAAGTGTGACTTTCAAGAGCTCAATGAAGTCGCGGCCCTTGCCTATAAGTGCATCAACCGTGCTCCGAGGAAGCGGCCGTCCATGAGGGACATCGTGCAGGTGCTGACGAGGATTGCGAAGTCTCGGCACCACAGGAATCATCACCACCACAAAAAGTCCTTGTCAGCAACAACAGCAGATGAAGTTTCCATTGATGTTGATAATCAAGACACCAAGGTTACTGCTGTTTCTCAGCACAGGAGAGAAGAGTCTATAGATAGTGCAGCTGACATGTATGATGTGTAG 1311 0.447 MKEESTGLIIGISIGVVIGVVLAISALFCFRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPESPVKAASRNGGMSFWLDGFKKSSMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMCTAETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGTLGWDLRVHIALDVARGLEYLHDGAVPPVIHRDIKSNNILLDQSMRARVCCCFGLSREEVVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTDGKVGWEEIVDSRLEGKCDFQELNEVAALAYKCINRAPRKRPSMRDIVQVLTRIAKSRHHRNHHHHKKSLSATTADEVSIDVDNQDTKVTAVSQHRREESIDSAADMYDV* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1238 436 Pfam Protein tyrosine and serine/threonine kinase 116 377 IPR001245 GO:0004672|GO:0006468
Amo18g1238 436 MobiDBLite consensus disorder prediction 416 430 - -
Amo18g1238 436 SUPERFAMILY Protein kinase-like (PK-like) 103 391 IPR011009 -
Amo18g1238 436 ProSiteProfiles Protein kinase domain profile. 114 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1238 436 MobiDBLite consensus disorder prediction 416 436 - -
Amo18g1238 436 PANTHER OS01G0253100 PROTEIN 5 409 IPR045271 GO:0004714|GO:0006468
Amo18g1238 436 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 409 - -
Amo18g1238 436 MobiDBLite consensus disorder prediction 382 404 - -
Amo18g1238 436 SMART serkin_6 114 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g1238 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Amo18g1238 436 Gene3D Transferase(Phosphotransferase) domain 1 190 406 - -
Amo18g1238 436 Gene3D Phosphorylase Kinase; domain 1 88 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1238 Amo-Chr18 21784042 21787121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1238 24 377 Glycoside Hydrolase AT3G07070 38.606 1.20e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Amo18g1238 PK_Tyr_Ser-Thr 6.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1238 - - gmx:100799586 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1238 18 21784042 21787121 Amo18g1238 18 21784042 21787121 ECH
Amo18g1238 18 21784042 21787121 Amo08g1414 08 22990074 22994267 hybridization