Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1234 ATGCCAACAGTGTGGTTCTCACTGAAGAGGTCACTACACTGCAAATCAGATGCATCAGAAGTTCATGATCCTAAATCAAGGAAGCAGCAATTGAGCACAATCTTAACCACAAAGAGGGCATCAGGTAGGTCAGGATGCTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATTGAGAAGCCACCAACTTGCAGCCCAAGATCCATAGGTAGCAGTGAGTTCCTCAACCCCATAACACATGAAGTCATCTTGAGCAATTCAAGGTGTGAACTCAAAATCACTGGCTATGGTGGAGGCTTCCATGAAGGGCTTGGAACTGTTGGTAACAATGGTAATAACAACAATGGTGGTGCTCTTGGTAGTGAAAATTCAACCTTTGTTGGAACTTTAAGGCCTGGTACCCCTGGACCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCCTTTAGGCCTTCAACCACCCCACCAAGGAAATCTCCTTTCCTTTTAGGAGATAGTAATAAAGAAGGGTCTGGCTTCCATGGTGGTGGTGGTGCTGCTGCTGGATTTCATCATTCAAGCAATAGATTGTCTCTTGAGACAGATTCCAATGGGGCTTGCACTGTTACTTGTCACAAATGTGGAGAGCAATTCACCAAATGGGATGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTAACTGAACTTGTGGAAGGTGATTCTTCAAGAAAAATAGTGGAGATAATATGCAGGACAAGCTGGTTGAAATCAGAGAACCAATGTGGTAGAATTGAGAGAGTGTTGAAAGTGCACAACATGCAGAAGACATTGGCAAGGTTTGAAGAATACAGAGAGATGGTGAAGATCAAAGCAAGCAAGCTCCAAAAGAAGCATCCAAGGTGCCTTGCTGATGGGAATGAACTCTTAAGGTTCTATGGAACCACAGTTGCATGTTCCTTAGGCCTCAATGGCTCTTCAAGCCTTTGTTTATCTGAGAGATGCTGTGTTTGTAGGATCATAAGAAATGGTTTTTCAGCCAAGAAGGAACTCAAGGGTGGAATTGGTGTTTTCACCACTTCAACAAGTGGAAGAGCCTTTGAATCCATTGAGGTAATTGATCAAGACCCTTCACTGAGAAAAGTGTTGATAGTCTGTAGAGTTATTGCTGGTAGGGTCCATAGGCCTCTAGAGAACATTCAAGAGATTGCAGGCCAAACAGGATTTGATTCTCTGGCTGGGAAAGTTGGTCTTTATTCAAATATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCCTGA 1332 0.4384 MPTVWFSLKRSLHCKSDASEVHDPKSRKQQLSTILTTKRASGRSGCSRSIANLKDVIHGSKRHIEKPPTCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGGFHEGLGTVGNNGNNNNGGALGSENSTFVGTLRPGTPGPGGHPTMHYFNPSFRPSTTPPRKSPFLLGDSNKEGSGFHGGGGAAAGFHHSSNRLSLETDSNGACTVTCHKCGEQFTKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSERCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEVIDQDPSLRKVLIVCRVIAGRVHRPLENIQEIAGQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1234 443 ProSitePatterns Zinc finger C2H2 type domain signature. 211 232 IPR013087 -
Amo18g1234 443 SUPERFAMILY ADP-ribosylation 234 442 - -
Amo18g1234 443 PANTHER - 2 443 - -
Amo18g1234 443 Gene3D - 223 442 - -
Amo18g1234 443 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1234 Amo-Chr18 21698649 21701163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1234 1 443 C2H2 Transcription Factor Family AT5G54630 66.102 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g1234 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1234 - - gmx:100787790 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1234 18 21698649 21701163 Amo18g1234 18 21698649 21701163 ECH