Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1232 TTTGATGAGATAATTAAGAAGCATAACAAGCACAGTCTTGAAGAAAAGAGGAAGCAAGAAGCACAAGAAGAACTCCTTATCCAACTATTTGATCCTAAATCTGAAATTTTTGATAAAGATACGGCAGAGTTATTATGGACTACTTGCTGGGAGGATTTGATTAAAATTGAAGATCTTGATTCATGCCCCATACAATCACCAAGTAACACGAATGAAATTAGTTTAGAAAGAGGAATAATAGCTCAAAGAAACATTGAAAATGTGATTAACAATTGCCAACCCCAATTGAGGGAAGGTTTCCTTGATTGCTTGAGAAGACACAATCCCCTCATCCATGTCTCAAAGAACAGTTTGCATGCAAGTTATGTGAGATTACTCTCTTCCAGAAGAAACTTGGGTCATGTTTTGCTCCAAGATGTGTCAAGAGCAGAAGATGTTGGAGATGAATCGGTGCAAACTAAAACTAAAACGGAAAACACTGCTCCAAAAGAGAGTGGAAGCGAACAAAATGTGTTTGTTATCGTAGGTATAACTGCAGTGTCATCATTTGGAATTGCAGCATTTGTTTTCATATTTTGTTGTAGATGTAGCAGAGCAAATGTTGATCAAACTGATGAGAAACCTCTTCTCAGCTTGTGTAGGACTGACTACTCCAATGGGTCCTTTAACAGTAGAAATCCTCCGCAGGAGTCAATGAAAAAAGAAGACAGCATTGAGACTCTTATGTCAAGTAAAATTTTATTCGATGACAATAAAAATAAAAACTTAGCGCATGAAATATATTCAATGCGATTAGCAGGACCGTATGAAATAAGTTCGGTAGGATTAGGAGGAGCTGATGCTTCTGTTGCCGCTTCGGCAAGACCATCAATGGACTTGAAACCTCCTCCCGGCAGGGTTGGACCACCGTTACCTTTGAAACCTCCTCCTGGAAGGCCAAATCCTCCCTCCGACCCACCAATTCCTCCTCCTTCCGCTGATGAAAATAATCCTCCTCTTCCGCCTCCTCCTGCTGCTGATGCTCCTCCTCCTCCTCCACCGCCAAAGCCGAGTAATGCTCCACCACCTCCTGCACCGCCACCGATTAGAGGTGGTGGGCCTCCGCCTCCTCCACCACCAGATGGAAAAGGCCCTCCACCTCCCCCTCCACCAGGTGTGAAAGGCCCAGGCCCAGGCCCTCCTCCACCACCAGCACTTAAGGGAGGAGGTGGTCCACGACCTCCTGGACCACCTCCTCTAAAAGGTGCGATTGGTGGGAAGGCTAGGCCTCCAGGACGAGGACCCGAAGGTCCTGGAGGTGTTCCCAAGCCAAAACTTAAGCCTTTCTTCTGGGATAAGGTTCAAGCAAACTCAGATCAGGCTATGGTTTGGAATCAGCTCAAAGCAGGATCCTTCCAGTTCAATGAAGAAATGATGGAGTCGCTTTTTGGATATAATGCTGCTCAAGAAAAATCTAAACCCGGAATGAAGAAAGAATCTCGTGAACAAACTCCTCAATATATTCAGATCATTGAACCAAAGAAAGCACAGAATTTGTCAATTCTGTTGAAAGCATTGAATGTAACACTAGAAGAAGTTCGTGATGCACTCCTTGAAGGAAATGAAATACCCCCAGAATTCCTAAACACTTTGTTGAAGATGGCCCCAAGTCAAGAGGAAGAACTAAAGCTCAGACTCTTCACAGGGGACCTACACATGCTTGGACCCGCTGACCGATTCTTGAAAGCCATTGTCGACATTCCATTTGCCTTCAAACGAATCGAAACACTACATTACATGTGCACTCTCTCTGATGAACTCATTACTACTAGAGATTCTTTTGGAGTTTTGGAGGTTGCATGTAATGAACTAAAAAGCAGCAGGCTATTCCTGAAGCTTCTAGAAGCGGTGTTGAAAACAGGAAACAGGATGAACGATGGAACATTCCGAGGCGGCGCGCAAGCATTCAAACTTGACACGCTGCTGAAGCTGTCTGATGTGAAAGGTGTAGACGGGAAAACCACGCTTCTTCACTTCGTGGTGCAAGAAATAATTAGAACAGAGGGCATAAGAGCAATGAGAATGTCAAAAGAGAGCCTAAGCTTTTCGAGCATAAAAACCGACGACCTTCTAGAAGATGTCAACTTAGAGAACGAAGACCAGTACCGGGACCTCGGTCTTAACGTGGTGTCCCGTCTGAGTAGTGAGCTTGAGAATGTCAAGAAAGCAGCGGCTCTGGATGTGGACGGTTTGATATCTACAACGGCCAGACTCGGCCACGGTCTTATAAAGGCCAGAGAATTTGTAAACACGGAACTTAAGACCCTGGAGGATGACCAGGGCTACTACGAAGTCACCAAGAGCTTCGTCGAGAGTGCGGAAGAGGGCGTCGCCAACTTGCTCCGTGAAGAGAAGAAGATCATGGCATTGATAAAGAGCACAGGTGACTACTTTCATGGCAATTCTGGCAAGGATGAAGGCTTGAGGTTGTTTCCGATAGTGCGTGATTTCTTGCTAATGTTGGATAAGGTTTGCAAAGAAATAAAGACTATACCAAAGAAACCACCACCGGCAGCAGCCGCACCGGCTCAGGCACAAGCACAATCACAAGCACAAGCACAAGCACAGGCAGCACCACCGGCGGCACCGGCATCAAATAATAATAATGAAAAACAGGAGAGTGGTAGTTCGAAAACTTCATCAGAGACACGCGCTGCTCCTCCGCCTCCTCCTATTTTTCGCAACCGACTTCCGGTAGTTGCAGAAAGGACGGGTGACTTTAGTTCGGACGATGACAGCCCATAG 2784 0.4558 FDEIIKKHNKHSLEEKRKQEAQEELLIQLFDPKSEIFDKDTAELLWTTCWEDLIKIEDLDSCPIQSPSNTNEISLERGIIAQRNIENVINNCQPQLREGFLDCLRRHNPLIHVSKNSLHASYVRLLSSRRNLGHVLLQDVSRAEDVGDESVQTKTKTENTAPKESGSEQNVFVIVGITAVSSFGIAAFVFIFCCRCSRANVDQTDEKPLLSLCRTDYSNGSFNSRNPPQESMKKEDSIETLMSSKILFDDNKNKNLAHEIYSMRLAGPYEISSVGLGGADASVAASARPSMDLKPPPGRVGPPLPLKPPPGRPNPPSDPPIPPPSADENNPPLPPPPAADAPPPPPPPKPSNAPPPPAPPPIRGGGPPPPPPPDGKGPPPPPPPGVKGPGPGPPPPPALKGGGGPRPPGPPPLKGAIGGKARPPGRGPEGPGGVPKPKLKPFFWDKVQANSDQAMVWNQLKAGSFQFNEEMMESLFGYNAAQEKSKPGMKKESREQTPQYIQIIEPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLNTLLKMAPSQEEELKLRLFTGDLHMLGPADRFLKAIVDIPFAFKRIETLHYMCTLSDELITTRDSFGVLEVACNELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAMRMSKESLSFSSIKTDDLLEDVNLENEDQYRDLGLNVVSRLSSELENVKKAAALDVDGLISTTARLGHGLIKAREFVNTELKTLEDDQGYYEVTKSFVESAEEGVANLLREEKKIMALIKSTGDYFHGNSGKDEGLRLFPIVRDFLLMLDKVCKEIKTIPKKPPPAAAAPAQAQAQSQAQAQAQAAPPAAPASNNNNEKQESGSSKTSSETRAAPPPPPIFRNRLPVVAERTGDFSSDDDSP* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1232 927 ProSiteProfiles Formin homology-2 (FH2) domain profile. 429 860 IPR015425 -
Amo18g1232 927 SMART it6_source 429 849 IPR015425 -
Amo18g1232 927 MobiDBLite consensus disorder prediction 846 927 - -
Amo18g1232 927 PANTHER FORMIN-LIKE PROTEIN 3 18 120 - -
Amo18g1232 927 PANTHER FORMIN-LIKE PROTEIN 3 347 867 - -
Amo18g1232 927 PANTHER FORMIN-RELATED 18 120 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo18g1232 927 PANTHER FORMIN-RELATED 347 867 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo18g1232 927 PANTHER FORMIN-LIKE PROTEIN 3 150 335 - -
Amo18g1232 927 Coils Coil 509 529 - -
Amo18g1232 927 Gene3D Formin, FH2 domain 434 872 IPR042201 -
Amo18g1232 927 MobiDBLite consensus disorder prediction 287 440 - -
Amo18g1232 927 SUPERFAMILY Formin homology 2 domain (FH2 domain) 498 847 - -
Amo18g1232 927 PANTHER FORMIN-RELATED 150 335 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Amo18g1232 927 Pfam Formin Homology 2 Domain 435 834 IPR015425 -
Amo18g1232 927 MobiDBLite consensus disorder prediction 295 414 - -
Amo18g1232 927 MobiDBLite consensus disorder prediction 856 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1232 Amo-Chr18 21686198 21689658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1232 426 852 FH2 protein (formin) Gene Family AT5G54650 63.972 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1232 - - ahf:112772643 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1232 18 21686198 21689658 Amo08g1408 08 22944016 22947367 hybridization
Amo18g1232 18 21686198 21689658 Amo13g2198 13 36849178 36855806 PCT
Amo18g1232 18 21686198 21689658 Amo03g0327 03 6113542 6120009 PCT
Amo13g2198 13 36849178 36855806 Amo18g1232 18 21686198 21689658 PCT
Amo03g0327 03 6113542 6120009 Amo18g1232 18 21686198 21689658 PCT