Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1193 ATGGCTACTACCAATGTTTTAAGGTCTAATGAAGTGGGTCATGTCTTATTGGGATTGTTCTGTCTATTGCTCTTGGTAAACAAGGGTAATGCTTATGAGTTTGTAGTAGGGGGTCAAAAGGGTTGGAGTGTTCCAAGTGACCCCAATTCCAATTCTTACAATCAATGGGCAGAAAAGAACAGATTTCAAATAGGAGACTCCCTAGTGTTCAATTACCAATCTGGTCAAGACTCGGTGCTTCAAGTAAGTAGTGAAGACTATGCAAGCTGCAACACTGATGGATCTTCTGAAAAATTCTCTGACGGCCATACAGTCATCAAGCTGAAGCAATCAGGGCCACACTATTTCATAAGCGGAAACAAAGACAACTGTGCCAAGAATGAGAAACTAGTGGTGATTGTGATGGCTGACAGGACCAACAGAAACACCAACCAAACAGGCACTGCTGTTTCTCCTTCTCCTTCTCCATTGCCCACTCTCTCAACAGAGTCAATTGCTCCTTCACCACCAACAGCAGGGACTGTTGGCCCTACACCACCAACAGGAACTGTGGGTGCTCCTCCACCAACAGGGACTGTCGGTGCGCCACCACCAACACCAGCAGGGACTGTAGGTGCTCCACCACCTRCACCAACMGGGACTATGGGGACTCCACCTCCTCTGCAAGGAGTTTCACCTCCACCACCAGGGACTTCGTTGACAAACCCAACTTCTGCTCCTGTCAGCCAACCTCCTCCTAATGCCGCTTCTTCAGTCTTTCTCAGCTTTGTTRGCTCTCTTGGAGCACTCATGGCTTCTATTCTGGTTTTATCATTCTAA 819 0.4737 MATTNVLRSNEVGHVLLGLFCLLLLVNKGNAYEFVVGGQKGWSVPSDPNSNSYNQWAEKNRFQIGDSLVFNYQSGQDSVLQVSSEDYASCNTDGSSEKFSDGHTVIKLKQSGPHYFISGNKDNCAKNEKLVVIVMADRTNRNTNQTGTAVSPSPSPLPTLSTESIAPSPPTAGTVGPTPPTGTVGAPPPTGTVGAPPPTPAGTVGAPPPXPTGTMGTPPPLQGVSPPPPGTSLTNPTSAPVSQPPPNAASSVFLSFVXSLGALMASILVLSF* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1193 272 Gene3D - 32 148 IPR008972 -
Amo18g1193 272 CDD OsENODL1_like 32 135 IPR041846 -
Amo18g1193 272 MobiDBLite consensus disorder prediction 142 248 - -
Amo18g1193 272 Pfam Plastocyanin-like domain 42 126 IPR003245 GO:0009055
Amo18g1193 272 ProSiteProfiles Phytocyanin domain profile. 32 136 IPR003245 GO:0009055
Amo18g1193 272 PANTHER BLUE COPPER PROTEIN 12 206 IPR039391 GO:0009055
Amo18g1193 272 SUPERFAMILY Cupredoxins 31 135 IPR008972 -
Amo18g1193 272 MobiDBLite consensus disorder prediction 142 171 - -
Amo18g1193 272 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 12 206 - -
Amo18g1193 272 PRINTS Proline rich extensin signature 196 213 - -
Amo18g1193 272 PRINTS Proline rich extensin signature 224 249 - -
Amo18g1193 272 PRINTS Proline rich extensin signature 149 170 - -
Amo18g1193 272 PRINTS Proline rich extensin signature 173 189 - -
Amo18g1193 272 MobiDBLite consensus disorder prediction 172 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1193 Amo-Chr18 20689019 20690460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1193 17 196 Phytocyanin Superfamily AT3G20570 55.801 6.69e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1193 - - adu:107462411 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1193 18 20689019 20690460 Amo18g1193 18 20689019 20690460 ECH
Amo18g1193 18 20689019 20690460 Amo08g1386 08 22642446 22644890 hybridization