Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1188 CATACGTCAAATTCAAATTATCTCTTGCTAGACAACAAGAGCAACATCAACATCATCATCAAGATCTTAATCATTGTCCCTCTGTTGATTTTATCAGTGTCAACAACAAGAAGGAATATTTTAATGGAAACTATACTTGGTTTTATCAAACTTAGGATTAACAGAGGCATTAATCTTGCAAAACGCGATGCTTATTCAAGCGACCCTTATGTTGTTGTCAAAATGGGTGAACAGAAGCTGAAAACTGCGTTCATACGTAAAAATATTAATCCGGTGTGGAATGAAGAATTGACTCTATACGTTAAGGATGTTGCAACTCCAATATATCTGCAAGTTTTTGACAAAGACACATTCACTAAAGACGATGAAATGGGTGATGCAGTTATAGATTTAAGGCCGTATATTGAGTGTCATTTGATTGGAATGGAGAGTATGCCAGATGGATGTGTGGTGAAGAGAATTCAACCAAATAGAACTAACTGTCTTGCTGAAGAGAGCACATGCTTTTGGCGCAATGGGAGTATAGTCCAACGTATGATGCTAAGATTGAAAAATGTTGAGTGTGGCGAAATAGAGTGTGAAATTGAGTGGCGTGATATTCCTGGCTGTAATGGTTTAGCAGAGCTGATAAAATCT 636 0.3711 HTSNSNYLLLDNKSNINIIIKILIIVPLLILSVSTTRRNILMETILGFIKLRINRGINLAKRDAYSSDPYVVVKMGEQKLKTAFIRKNINPVWNEELTLYVKDVATPIYLQVFDKDTFTKDDEMGDAVIDLRPYIECHLIGMESMPDGCVVKRIQPNRTNCLAEESTCFWRNGSIVQRMMLRLKNVECGEIECEIEWRDIPGCNGLAELIKS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1188 212 SMART C2_3c 48 143 IPR000008 -
Amo18g1188 212 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 42 204 IPR044562 -
Amo18g1188 212 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 42 204 - -
Amo18g1188 212 Gene3D C2 domain 46 202 IPR035892 -
Amo18g1188 212 ProSiteProfiles C2 domain profile. 32 144 IPR000008 -
Amo18g1188 212 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 198 IPR035892 -
Amo18g1188 212 Pfam C2 domain 49 133 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1188 Amo-Chr18 20623814 20624661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1188 79 207 C2H2 Transcription Factor Family AT1G70790 61.069 5.65e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1188 - - gmx:100788395 236.498