Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1187 ATGTCAGTGGAACATATACTTGGTGCTATCAAACTTAGGATTAAAAGAGGCATTAATCTCGCAATACGCGATACTTATTCTAGTGACCCTTATGTTGTTGTCAAAATGGAAGAACAGAAGTTGAAAACCGCGTACATACGGAAAAATATTAATCCAGTATGGAATGAAGAATTGACTCTTTATGTTAAGGATGTTGCAACTCCAATAACTATGCAAGTTTTCGACAAAGACATATTCACTGCAGACGATGAAATGGGCGATGCATTTATAGACATAAGGCCGTATATTGGGTGCCATTTGATGGGATTAAAGAGTTTGCCAGATGGATGTGTGGTGAAGAAAATTCAACCAAATAGGACTAACTGTCTAGCTGAAGAGAGCACATGCTTTTGGCGCAATGGGAGTATAGTCCAACCTATGATTTTAAGACTGAAAAATGTTGAGTGCGGTGAAATAGAATGTGAAATTGAGTGGCGTAATATTCCCGGTTGTAAAGGTTTATCAGGACTAAGATCTTGA 519 0.3796 MSVEHILGAIKLRIKRGINLAIRDTYSSDPYVVVKMEEQKLKTAYIRKNINPVWNEELTLYVKDVATPITMQVFDKDIFTADDEMGDAFIDIRPYIGCHLMGLKSLPDGCVVKKIQPNRTNCLAEESTCFWRNGSIVQPMILRLKNVECGEIECEIEWRNIPGCKGLSGLRS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1187 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 165 IPR044562 -
Amo18g1187 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 160 IPR035892 -
Amo18g1187 172 Gene3D C2 domain 7 162 IPR035892 -
Amo18g1187 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 5 165 - -
Amo18g1187 172 Pfam C2 domain 9 94 IPR000008 -
Amo18g1187 172 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Amo18g1187 172 SMART C2_3c 9 115 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1187 Amo-Chr18 20593333 20594053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1187 40 168 C2H2 Transcription Factor Family AT1G70790 61.832 9.95e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1187 - - gmx:100788395 231.106