Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1176 ATGGGGTCGAAAGATCCAAGCGAGAAGGCGCGGGTTTGGAGACCCAAGTTTAAGTCCCTACTCTGTTGCTTGCAATCTCCTTCTCCCATGGATTCCAAGCTGCAAGATTCAGCTTCCAGTTGCACTCATCAGTCAACGGATCCCAACAGGAACAGGCGGTTATACAAGCACGATGTGTTTCTGAGTTTCAGAGGCACCGACACTCGCAACAATTTCATCGATCATCTTTATCATAATCTCATCAGGAAAGGAGTTTTTGCCTTCAAGGACAACGAGAGGCTTCAGAAAGGGGAATCTATCTCTTCTCAGCTTCTGCAAGCCATCAGAGATTCCCGCGTTTCTATCATTGTCTTCTCACGTGATTATGCTGCCTCCACATGGTGCCTCGATGAAATGGCTACCATAGCTCAATGCAAGAAAGAGTTCGGACAGAAGGTTTTCTCCGTTTTCTATGATGTGGATCCTTCTGATGTTCGGAAGCAGAGTGGGGTGTACGGGGATGCTTTTGCTTCACATACAAAGAGGTTCCAAAAGGATCTTAGCAAGGTTAAACGCTGGAAGAGAGCTATGACGGATTTGGCCAATTCTGCAGGATGGGATGTTAGAGATAAGCCACAATTCACAGAGATTGATAAAATCATTCAAAAGGTAATAAAAGAATTGGATCATAGATTTTCCGGGTTTGCTGATGATCTAGTAGGGATACAACCATGTGTAAAAGAATTAGAACAAGTTCTAAAGATAAACCCAAAGGATGAAGATGTTCGAGTTCTTGGAATCTGGGGAATGGGTGGAATAGGAAAGACAACTCTTGCCAGTGTCTTGTATGACAAAATCTCTTATATGTTTGACGCACATTGCTTTATCGAGAATGTGAGCAAAAGTTATAGAGAGGGCAGTGCTATTTCCGTTCAAAGACAAATTCTTCGTCGAACTCTAGAGGAACAAGATCTAGATAAATATAGTCCTTCTGAAATAGCTGGGATAATCAGAAATAGGCTATCTTCCAGAAAGCTCCTTATAGTTCTTGATAATGTTGATGAAAGAGAACAATTAGATCAATTGGCTATAAATACTAAATTACTTGGAAGAGGAAGCAGAATAATCATAACCACCAGGGATAAACATATTCTTGAAAGTTATGGAATAGATGCAATTCACAATGTTTCCTTAATGAATTCTCAAGATGCTTCAGAACTTTTGTTTAGAAAGGCCTTCAAAAGTGATCGTCCTAGTAGCAGCACTTGTATGGAGCTAACTCCCATCATACTGGAATATGCTCAAGGTCTTCCATTAGCAATCAAAGTAGTGGGTTCTTTCTTGGACAAACGGAATGCTTCCCAATGGAGGGCTTATTTAGAAAGATTGAAGAAATATCCGGACAAAAAACTTACAGATGTGCTTCAAGTAAGTTTTGAAGACCTGCAAAATGATGATAAAGAAATATTTTTGCACATTGCTTGCTTTTTTAGAGGAGACAGGGAAGATTATGTAAAGCGAATTCTAGCTACTTGCGGACTACAACCTAACATTGGAATTCCAGTTCTAGAGGAGAGATCACTCATAACCATTAAGAACCAAGAGATTCATATGCATGACATGTTACAAGAATTGGGGAAGAAACTTGTTCGGGAAAGATATCCAGAAGAGCCAGCATTATGGAGCAGATTATGGCGGTGTAGCGATTTTGAAAATGCTCTGATGTCAGCTGAGACGGGAACAAATCATGTCAAAGCCATAGTCTTAGATCAGAGAGAGGAGATGCCCGYGTGCAGTCAGTTGAGGATCAGAGGATTGTCAAAATTGAGGGATCTTAAATTGCTTATATTATACCATAAAAACTTTTTAGGAAGCCTTGATTTTCTTTCTCCTAATCTGCAGTATCTTGCTTGGCATGGCTATCCTTTCCCTTCTTTACCATCGTTTCAGCCTTACAGCAGGCTTGTTGAACTGAGCCTGCCTTATAGCAACGTTAAACGACTATGGGAAGGCAACAAGAATATCCCACACTTGGAAAAGGTGGACTTGAGCTACTCAATGGATCTCATAGAGACACCAAATTTTGAATGGAATGCAAAACTTAAGCGACTAGATTTTACAGGATGCACAAACCTGATCCACATCCATCCCTCAATTGGACTTCTTAACCAGCTTGCATACTTGAGTTTGCAAAACTGTAGCAGTTTGTCAAACCTCAATCTTGGCGATGATTGTAATTTAAGTTCTCTTAGAGTTCTATGCCTTTCTGGCTGCACAAACCTTAATAAGAGTCCAGATTTCACAGGGCTTTCAAATCTTGAGTACCTCGATCTTGAAAATTGTACAAGTTTATCWACAGTTCATGAATCTATTGGTGCTCTTGTAATGTTAAAGTTCTTGAGTTTGAGAGGCTGTATAATTATTTCTATGCCCAAAGAAGTCAACAATSTGATATCTCTTCAAACCCTAGATTTAAGCCGCTGTCTACGACTGAGGTATCCCCTCGGACAGATTTATTCATCTTACCTAGAATCTTTGATATCTCTGGACCTTGGCACATGCCATTTTATAGACAATATTCCTGATTCCATTGGAGTGTTGACTTGTTTAGAAAGATTAAACTTGAAGGAATGTCAGTGTAGTCATTTACCTGATACCATCAAGAAGCTTTCCAGACTGGCATATTTGAATTTGGCGGATTGCTCATATCTTGAAAGATTGCCTGAGCTCCCATTTGATAGTGCACCGTCAGGGGGAAGGTATTTTCAAACAGTATCTGCATCTCGTAACCATAGGTCGGGATTGTATGTTACAACCTACAATAAGGTTATGAAAAAAACCTTTAACTATATGCCGGCTGCGCTTTCATGGTTTGCTAGACTTGTTGAGGTAAGTACTCTCCATGCTTTCCTATTCGCTTTTTCACTAATATATCTCAGTTTCCTTTGTTTTATGTGGAAGCAGCAACCCTGTCATTTCCGATGTGGGTTTGACATCATAATTCCTGAAAATGAGAGTAGTGGAATTCCAGGATGGTATTTCAATCATCAGTTTCAAGGTGGATCAACTGTAAGGGTAGTGGACTATGCTGATGCAGATGACAACTGGCTTGGGTTTTCATTTTGTGTTACATTTGAGCATGTTAAAAATGATTGTGATTCATCTGAGCTGCTGCGTCATTTTTATCTTTCTTTTGAAAGTGAGCACACGGAAGAATATTTTGATATGCCTTCTTCAGTCGAAACCGATCGGGATATCGATGGAACACATGCTTGGATAATCTACATCTCTCGGGTGCATTGCCATTTTGTGAAAACAGGAGCCCGTATAAGATTTAAAGCCTGCAAGGGAATGAAGTTGCACAAATGGGGGTTTCGCATGGTGTTCAAACAAGATATAGAGAAACTGAAGAGGAGGTTACAAAGAGTGGATAATAAAAAGCAGAGTCCTATCTTTGATTCTTCCAGATTGGTCATTGAGACTGAGTATGTTGATGAAGACCTAAGTAGCAGCTCGGAGTCCAAGATCATGCTTCCTTATAATTGGTTGGTTACCGACGAAGAAGAAAATGAGAAGATGGAAGCAAAGGCCAAAGAAGATAATCTCTCTAATTTGGGCTTTATATAG 3606 0.4002 MGSKDPSEKARVWRPKFKSLLCCLQSPSPMDSKLQDSASSCTHQSTDPNRNRRLYKHDVFLSFRGTDTRNNFIDHLYHNLIRKGVFAFKDNERLQKGESISSQLLQAIRDSRVSIIVFSRDYAASTWCLDEMATIAQCKKEFGQKVFSVFYDVDPSDVRKQSGVYGDAFASHTKRFQKDLSKVKRWKRAMTDLANSAGWDVRDKPQFTEIDKIIQKVIKELDHRFSGFADDLVGIQPCVKELEQVLKINPKDEDVRVLGIWGMGGIGKTTLASVLYDKISYMFDAHCFIENVSKSYREGSAISVQRQILRRTLEEQDLDKYSPSEIAGIIRNRLSSRKLLIVLDNVDEREQLDQLAINTKLLGRGSRIIITTRDKHILESYGIDAIHNVSLMNSQDASELLFRKAFKSDRPSSSTCMELTPIILEYAQGLPLAIKVVGSFLDKRNASQWRAYLERLKKYPDKKLTDVLQVSFEDLQNDDKEIFLHIACFFRGDREDYVKRILATCGLQPNIGIPVLEERSLITIKNQEIHMHDMLQELGKKLVRERYPEEPALWSRLWRCSDFENALMSAETGTNHVKAIVLDQREEMPXCSQLRIRGLSKLRDLKLLILYHKNFLGSLDFLSPNLQYLAWHGYPFPSLPSFQPYSRLVELSLPYSNVKRLWEGNKNIPHLEKVDLSYSMDLIETPNFEWNAKLKRLDFTGCTNLIHIHPSIGLLNQLAYLSLQNCSSLSNLNLGDDCNLSSLRVLCLSGCTNLNKSPDFTGLSNLEYLDLENCTSLSTVHESIGALVMLKFLSLRGCIIISMPKEVNNXISLQTLDLSRCLRLRYPLGQIYSSYLESLISLDLGTCHFIDNIPDSIGVLTCLERLNLKECQCSHLPDTIKKLSRLAYLNLADCSYLERLPELPFDSAPSGGRYFQTVSASRNHRSGLYVTTYNKVMKKTFNYMPAALSWFARLVEVSTLHAFLFAFSLIYLSFLCFMWKQQPCHFRCGFDIIIPENESSGIPGWYFNHQFQGGSTVRVVDYADADDNWLGFSFCVTFEHVKNDCDSSELLRHFYLSFESEHTEEYFDMPSSVETDRDIDGTHAWIIYISRVHCHFVKTGARIRFKACKGMKLHKWGFRMVFKQDIEKLKRRLQRVDNKKQSPIFDSSRLVIETEYVDEDLSSSSESKIMLPYNWLVTDEEENEKMEAKAKEDNLSNLGFI* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1176 1201 Pfam C-JID domain 999 1127 IPR045344 -
Amo18g1176 1201 Coils Coil 1119 1139 - -
Amo18g1176 1201 SMART till_3 56 196 IPR000157 GO:0007165
Amo18g1176 1201 Coils Coil 1178 1198 - -
Amo18g1176 1201 Pfam TIR domain 56 219 IPR000157 GO:0007165
Amo18g1176 1201 SUPERFAMILY Toll/Interleukin receptor TIR domain 51 199 IPR035897 -
Amo18g1176 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 486 IPR027417 -
Amo18g1176 1201 Pfam NB-ARC domain 243 460 IPR002182 GO:0043531
Amo18g1176 1201 PRINTS Disease resistance protein signature 761 777 - -
Amo18g1176 1201 PRINTS Disease resistance protein signature 333 347 - -
Amo18g1176 1201 PRINTS Disease resistance protein signature 427 441 - -
Amo18g1176 1201 PRINTS Disease resistance protein signature 257 272 - -
Amo18g1176 1201 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 758 872 - -
Amo18g1176 1201 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 49 755 - -
Amo18g1176 1201 Gene3D - 54 228 IPR035897 -
Amo18g1176 1201 Pfam Leucine Rich Repeat 648 666 IPR011713 -
Amo18g1176 1201 SUPERFAMILY L domain-like 531 909 - -
Amo18g1176 1201 Gene3D - 392 476 IPR042197 -
Amo18g1176 1201 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 758 872 IPR044974 GO:0006952
Amo18g1176 1201 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 49 755 IPR044974 GO:0006952
Amo18g1176 1201 Gene3D Ribonuclease Inhibitor 738 910 IPR032675 -
Amo18g1176 1201 Gene3D Ribonuclease Inhibitor 591 737 IPR032675 -
Amo18g1176 1201 ProSiteProfiles TIR domain profile. 55 221 IPR000157 GO:0007165
Amo18g1176 1201 Gene3D - 230 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1176 Amo-Chr18 20352118 20357559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1176 57 893 WRKY Transcription Factor Family AT4G12020 27.662 6.51e-74 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1176 - - ahf:112707227 1284.63